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The map label for this gene is nocR [H]

Identifier: 91784415

GI number: 91784415

Start: 3388556

End: 3389485

Strand: Reverse

Name: nocR [H]

Synonym: Bxe_A1384

Alternate gene names: 91784415

Gene position: 3389485-3388556 (Counterclockwise)

Preceding gene: 91784421

Following gene: 91784414

Centisome position: 69.23

GC content: 62.69

Gene sequence:

>930_bases
GTGGCCAGGCTCAATGCCAAGCAGATGGAAGTGTTCGTTGCAGTGATGACGCACGGCTCGATAACCGCCGCCGGGCAGCG
CCTGAACGTATCGCAGCCGGCCGTGAGCCGCATGATCGAGCGTTTCGAGCAGGAGGCCGGTTTCGTCGCTTTCGAGCGGC
GCCGAGGCAAGCTGGTGCCGACGCCGGAAGCGGAAATTTTCTTTGCCGAAGTCTCGCAGGTCTATCGCGGCCTCGATTAT
CTGAACGAAGTGGCGAGAGAAATCGGCACCACGCGGCGCGGCTATTTGCGCGTTGGCGTATTTCCCGCCTTCGCCGAGGG
CTGGATCACCGAGCGCATCACACGCTATGTCGCGGGGCGTGAGGAACTGCTGACTTCGCTGGAGCCGATGTCGACCGACA
GCGTGATCGAAGCCGTGTCGCGGCAAACCATTGATCTCGGCATTGCGCTGCGCGCGTCGGATCGCGAGGGTTTGCGCAGC
GAGGAGATCTCCAGTTCGGAGATCGTCTGCATTCTGCCCAAAGGGCACCGCCTGACCGGACGTCCCGTGTTGCAGCCGAC
CGATCTGTCCGGCGAAGACTTCATTTCGATGGCCGCCAAGGTGAAGGCGCGCACGTCTATCGACGCGGTGTTCGATTCGA
GCGGCGTGGAGCGACGCATACGCGCGGAGACACCGTGGGCATCGACGGTGTGCCATATGGTGGCGCATGGGCTGGGCGTC
GGGCTCGTCATTCGCGAGTCGGCGTTCGAGTTTGCGCATCTCGGCTATCACATCGCCGCGTTCAAGCCGCGTATCGACTA
TCGCGCGTATCTGATTACGTCGACCGCTCGCCCGTTGTCTACTGCGGCAAAAGGGTTTCGCGACATGCTGCTGCTCGAAT
TCAACCAGGCAAAGAAGGCGCCGCGGGCGTCGAAGCGCTGGCCGACCTGA

Upstream 100 bases:

>100_bases
AATTTTGTTCGTTTGATCCTATTCTATGTAATGCCCTAAGATCGCTGCACGGTGGGCTTTCAACGCTACCGCACTGGACC
AATAATTGGGGGACGCGCTC

Downstream 100 bases:

>100_bases
CAGAAAGAGCCATGACCCGCGTCAACGGGTCGATGGACTCACAGCCTATAACGCGTGCTGTGGCTTTGCCACGTCCTGGA
CGTCGTCAAGCAGTCTTTAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MARLNAKQMEVFVAVMTHGSITAAGQRLNVSQPAVSRMIERFEQEAGFVAFERRRGKLVPTPEAEIFFAEVSQVYRGLDY
LNEVAREIGTTRRGYLRVGVFPAFAEGWITERITRYVAGREELLTSLEPMSTDSVIEAVSRQTIDLGIALRASDREGLRS
EEISSSEIVCILPKGHRLTGRPVLQPTDLSGEDFISMAAKVKARTSIDAVFDSSGVERRIRAETPWASTVCHMVAHGLGV
GLVIRESAFEFAHLGYHIAAFKPRIDYRAYLITSTARPLSTAAKGFRDMLLLEFNQAKKAPRASKRWPT

Sequences:

>Translated_309_residues
MARLNAKQMEVFVAVMTHGSITAAGQRLNVSQPAVSRMIERFEQEAGFVAFERRRGKLVPTPEAEIFFAEVSQVYRGLDY
LNEVAREIGTTRRGYLRVGVFPAFAEGWITERITRYVAGREELLTSLEPMSTDSVIEAVSRQTIDLGIALRASDREGLRS
EEISSSEIVCILPKGHRLTGRPVLQPTDLSGEDFISMAAKVKARTSIDAVFDSSGVERRIRAETPWASTVCHMVAHGLGV
GLVIRESAFEFAHLGYHIAAFKPRIDYRAYLITSTARPLSTAAKGFRDMLLLEFNQAKKAPRASKRWPT
>Mature_308_residues
ARLNAKQMEVFVAVMTHGSITAAGQRLNVSQPAVSRMIERFEQEAGFVAFERRRGKLVPTPEAEIFFAEVSQVYRGLDYL
NEVAREIGTTRRGYLRVGVFPAFAEGWITERITRYVAGREELLTSLEPMSTDSVIEAVSRQTIDLGIALRASDREGLRSE
EISSSEIVCILPKGHRLTGRPVLQPTDLSGEDFISMAAKVKARTSIDAVFDSSGVERRIRAETPWASTVCHMVAHGLGVG
LVIRESAFEFAHLGYHIAAFKPRIDYRAYLITSTARPLSTAAKGFRDMLLLEFNQAKKAPRASKRWPT

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=290, Percent_Identity=33.448275862069, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI157672245, Length=229, Percent_Identity=23.5807860262009, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789173, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87081904, Length=189, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=23.6734693877551, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34392; Mature: 34261

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLNAKQMEVFVAVMTHGSITAAGQRLNVSQPAVSRMIERFEQEAGFVAFERRRGKLVP
CCCCCHHHHHEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
TPEAEIFFAEVSQVYRGLDYLNEVAREIGTTRRGYLRVGVFPAFAEGWITERITRYVAGR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCH
EELLTSLEPMSTDSVIEAVSRQTIDLGIALRASDREGLRSEEISSSEIVCILPKGHRLTG
HHHHHHCCCCCHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC
RPVLQPTDLSGEDFISMAAKVKARTSIDAVFDSSGVERRIRAETPWASTVCHMVAHGLGV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHCCC
GLVIRESAFEFAHLGYHIAAFKPRIDYRAYLITSTARPLSTAAKGFRDMLLLEFNQAKKA
EEEEEHHHHHHHHHCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHEEEHHHHCC
PRASKRWPT
CCCCCCCCC
>Mature Secondary Structure 
ARLNAKQMEVFVAVMTHGSITAAGQRLNVSQPAVSRMIERFEQEAGFVAFERRRGKLVP
CCCCHHHHHEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
TPEAEIFFAEVSQVYRGLDYLNEVAREIGTTRRGYLRVGVFPAFAEGWITERITRYVAGR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCH
EELLTSLEPMSTDSVIEAVSRQTIDLGIALRASDREGLRSEEISSSEIVCILPKGHRLTG
HHHHHHCCCCCHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC
RPVLQPTDLSGEDFISMAAKVKARTSIDAVFDSSGVERRIRAETPWASTVCHMVAHGLGV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHCCC
GLVIRESAFEFAHLGYHIAAFKPRIDYRAYLITSTARPLSTAAKGFRDMLLLEFNQAKKA
EEEEEHHHHHHHHHCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHEEEHHHHCC
PRASKRWPT
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]