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The map label for this gene is yciR [C]

Identifier: 91784306

GI number: 91784306

Start: 3265034

End: 3267343

Strand: Reverse

Name: yciR [C]

Synonym: Bxe_A1494

Alternate gene names: 91784306

Gene position: 3267343-3265034 (Counterclockwise)

Preceding gene: 91784307

Following gene: 91784305

Centisome position: 66.74

GC content: 65.63

Gene sequence:

>2310_bases
ATGACTTGCGAAGCGACATCAGAAAACACGATCGGAGCCGCTCCTGATGGCACCCGTTACGGCGCGAATCTCGCCGAAGG
GGTGCTCGCGTCGGAGCGCACGGTGTTGCGTTTGATCACACGCAACACGCCGCTGCCGGAATTGCTGGACGAAGTATGCC
GCCGCGCGGAAGCGCTGCTGGGCGAAGGCGCGTCCTGTTCCATCCTGTTGCTCGACGCCGAAGGCGTGCGCGCCAGGGTG
GGCGGCGCGCCGTCGCTGCCCGAACACTTCAGCGCGGCGATCGACGGGGTGGCGATCGGTCCGCGGGCCGGCTCGTGCGG
CACCGCCATGTTCGAGCGGCGGCTCGTCGTCGTCGAGGATATCGAAACCGATCCGCTGTGGGCCGACTTCCGGCACCTCG
CGCTGCCGCTCGGCCTCAGGGCCTGCTGGTCGGTACCTTTTGAAAACGATGCCGGTGTGGTGCTCGGCGCCTTCGCGGTG
TATTACCGCAAGTCGCGCCGTCCCAGCGCCGAAGAAGAAGCCATGCTGCGCGATATCAGCCGCAGCGTCGGTCTGGCCGT
GCATCAGGACACAATGGCGCAGCGGCTCGCGCACAGCGAGGAACATCACCGGCTGGTAGTCGATCATCTGATCGAAGGGA
TCGTCGTGCAGTCGCGGGCGGGTATCGTGCTGGCCTGCAATCCGAGCGCGCAGCGCATTCTGCGGGCCACGCCGCAGATC
GTCGGCCGCAGTATCCAGACGGTGATGGTGCGCGCCTATCACGAGGACGGCTCGGTCGTCACCGAGGCGGTCCGCCCGAC
CAACCAGGTGCTGGCAACCGGCAAACCCATGCTCGGCGTCACGATCGGCCTGGAGCTGATTGGCGGCGACATCGTCTGGA
TCACAGAGAACGTGGTGCCGATCATCAAGGCGGGCGAGAGCGAGCCGAGTTCAGTGCTGATCTCGTTCACCGACATCGGC
CCCGTGCGCGAAGCGCAACGGCAGCTCAAGTTCCTCGCCACCCGCGATTCGCTCACGGGCCTTTACAACCGCGCGTATCT
CACGGAGCGGCTGCGCGATCTGTTTTCGCTCGATACCTCGTCCGGTATGGGCGAACTGGTGAGCGTCGCGGTGCTGTTCG
TCGACCTGGACGGCTTCAAGAAGGTCAACGACACCGCCGGTCACGAGGCCGGCGACGCCCTGCTCTGCAGCGTGGCGGAG
CGGCTCGCGGCGTGCATTTCGCCCGAAGACACGCTGGCGCGCGTAGGCGGCGACGAGTTCGTGATCGTGGTCAGCGCGTA
TGAAAACACCGGGCATCTGATCGGCCTCGCGCAGCGCATTCTCGACATGATCGCCGTGCCGTTCGCGGTGGCGGACAACG
AGTACTACCTGGGCGCGTCGATCGGCATCAGCCGTTTTCCCGAAGACGGCCAGGACGTGGCCACGCTGCTGCGCAACGCC
GATTCGGCGATGTACTACGCCAAGCAGCGCGGCCGCAACAACTTCCAGTTCTTCACCGCCGAGCTGAACCGGCAGCTGCA
ACGCCGCTTCACGATCGAGCAGTCGCTGCGGCGCGCGCTCGCCGGCAACGAACTGAGCCTCGTGTATCAGCCGATCGTCG
ACAGTCAGGACGGCCGCACGATCGGCGCGGAGGCGCTGCTGCGCTGGTACAACAGCGAGCTGGGCAACGTGTCGCCGGGG
GAATTCATTCCCGTGGCCGAAGATGCGGGGCTGATTGTCGAGATCGGCAACTTCGTGCTGACGCGGGCCTGCGAACAGGT
GGCGCAGTGGCGGCGCACGCTGGCGCCGGAGCTGATCGTCGCGGTGAATCTGTCGCCCCGGCAGTTCAACGACGGCCTCG
TGGAGCGCATCCAACGCTGCCTCCTGCAAACCGGGCTCGAACCGGCGGCGCTGGAACTGGAGATCACCGAGCGGCTGCTG
ATGAGCGACAGCGAAACGGTGCTGCCCATGCTGAGCGCGCTGAATGCGATGGGCGTACGTATTTCCGTCGACGATTTCGG
CACCGGTTACTCGTCGTTGTCGTATCTGAAGCGCTTTCCGCTGCATAACCTGAAGATCGATCGCTCGTTCGTCGCCGGCT
TGCCGGATCATCGCGATTCCATTGCGATCACCCAGGCGGTGGTGGCGATGGCGCACTCGCTCGGCATGAACGTCACCGCC
GAAGGGGTGGAAACCGCCGAACAGGCGGCTTTCCTGCGCGCGATCGACTGCGACAAGCAGCAGGGCTATTTCTACAGCCG
CCCGGTCGGCGCCAGTGCGTATGCCCGCAGTTTGTGGGACGCGCAGGTCGGTCTCGCCGACGCCTCCTGA

Upstream 100 bases:

>100_bases
GAATGGTCCGCGATGTGCGAAGAATAACCTCGCACCCCTCGCGTAAACCCCGGTGCGCCGCGTACACTAAGTTGCCGATG
TCGGGTTAGGGGGCGCACAA

Downstream 100 bases:

>100_bases
GCCGGCCGGCAGCCACGCGCGCAGGCCCGGCGCCTTGCCTGGCCTCGCGCACGCGGGAATCCGCCGCGCTCCGCTGCACT
TGGCCGCCCGCGTCCGGATT

Product: diguanylate cyclase/phosphodiesterase with GAF sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 769; Mature: 768

Protein sequence:

>769_residues
MTCEATSENTIGAAPDGTRYGANLAEGVLASERTVLRLITRNTPLPELLDEVCRRAEALLGEGASCSILLLDAEGVRARV
GGAPSLPEHFSAAIDGVAIGPRAGSCGTAMFERRLVVVEDIETDPLWADFRHLALPLGLRACWSVPFENDAGVVLGAFAV
YYRKSRRPSAEEEAMLRDISRSVGLAVHQDTMAQRLAHSEEHHRLVVDHLIEGIVVQSRAGIVLACNPSAQRILRATPQI
VGRSIQTVMVRAYHEDGSVVTEAVRPTNQVLATGKPMLGVTIGLELIGGDIVWITENVVPIIKAGESEPSSVLISFTDIG
PVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTSSGMGELVSVAVLFVDLDGFKKVNDTAGHEAGDALLCSVAE
RLAACISPEDTLARVGGDEFVIVVSAYENTGHLIGLAQRILDMIAVPFAVADNEYYLGASIGISRFPEDGQDVATLLRNA
DSAMYYAKQRGRNNFQFFTAELNRQLQRRFTIEQSLRRALAGNELSLVYQPIVDSQDGRTIGAEALLRWYNSELGNVSPG
EFIPVAEDAGLIVEIGNFVLTRACEQVAQWRRTLAPELIVAVNLSPRQFNDGLVERIQRCLLQTGLEPAALELEITERLL
MSDSETVLPMLSALNAMGVRISVDDFGTGYSSLSYLKRFPLHNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTA
EGVETAEQAAFLRAIDCDKQQGYFYSRPVGASAYARSLWDAQVGLADAS

Sequences:

>Translated_769_residues
MTCEATSENTIGAAPDGTRYGANLAEGVLASERTVLRLITRNTPLPELLDEVCRRAEALLGEGASCSILLLDAEGVRARV
GGAPSLPEHFSAAIDGVAIGPRAGSCGTAMFERRLVVVEDIETDPLWADFRHLALPLGLRACWSVPFENDAGVVLGAFAV
YYRKSRRPSAEEEAMLRDISRSVGLAVHQDTMAQRLAHSEEHHRLVVDHLIEGIVVQSRAGIVLACNPSAQRILRATPQI
VGRSIQTVMVRAYHEDGSVVTEAVRPTNQVLATGKPMLGVTIGLELIGGDIVWITENVVPIIKAGESEPSSVLISFTDIG
PVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTSSGMGELVSVAVLFVDLDGFKKVNDTAGHEAGDALLCSVAE
RLAACISPEDTLARVGGDEFVIVVSAYENTGHLIGLAQRILDMIAVPFAVADNEYYLGASIGISRFPEDGQDVATLLRNA
DSAMYYAKQRGRNNFQFFTAELNRQLQRRFTIEQSLRRALAGNELSLVYQPIVDSQDGRTIGAEALLRWYNSELGNVSPG
EFIPVAEDAGLIVEIGNFVLTRACEQVAQWRRTLAPELIVAVNLSPRQFNDGLVERIQRCLLQTGLEPAALELEITERLL
MSDSETVLPMLSALNAMGVRISVDDFGTGYSSLSYLKRFPLHNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTA
EGVETAEQAAFLRAIDCDKQQGYFYSRPVGASAYARSLWDAQVGLADAS
>Mature_768_residues
TCEATSENTIGAAPDGTRYGANLAEGVLASERTVLRLITRNTPLPELLDEVCRRAEALLGEGASCSILLLDAEGVRARVG
GAPSLPEHFSAAIDGVAIGPRAGSCGTAMFERRLVVVEDIETDPLWADFRHLALPLGLRACWSVPFENDAGVVLGAFAVY
YRKSRRPSAEEEAMLRDISRSVGLAVHQDTMAQRLAHSEEHHRLVVDHLIEGIVVQSRAGIVLACNPSAQRILRATPQIV
GRSIQTVMVRAYHEDGSVVTEAVRPTNQVLATGKPMLGVTIGLELIGGDIVWITENVVPIIKAGESEPSSVLISFTDIGP
VREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTSSGMGELVSVAVLFVDLDGFKKVNDTAGHEAGDALLCSVAER
LAACISPEDTLARVGGDEFVIVVSAYENTGHLIGLAQRILDMIAVPFAVADNEYYLGASIGISRFPEDGQDVATLLRNAD
SAMYYAKQRGRNNFQFFTAELNRQLQRRFTIEQSLRRALAGNELSLVYQPIVDSQDGRTIGAEALLRWYNSELGNVSPGE
FIPVAEDAGLIVEIGNFVLTRACEQVAQWRRTLAPELIVAVNLSPRQFNDGLVERIQRCLLQTGLEPAALELEITERLLM
SDSETVLPMLSALNAMGVRISVDDFGTGYSSLSYLKRFPLHNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAE
GVETAEQAAFLRAIDCDKQQGYFYSRPVGASAYARSLWDAQVGLADAS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=496, Percent_Identity=36.2903225806452, Blast_Score=303, Evalue=3e-83,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=34.7319347319347, Blast_Score=259, Evalue=7e-70,
Organism=Escherichia coli, GI226510982, Length=434, Percent_Identity=29.9539170506912, Blast_Score=185, Evalue=1e-47,
Organism=Escherichia coli, GI1790496, Length=258, Percent_Identity=35.6589147286822, Blast_Score=167, Evalue=3e-42,
Organism=Escherichia coli, GI1787055, Length=261, Percent_Identity=34.4827586206897, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI87081743, Length=254, Percent_Identity=33.0708661417323, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1788502, Length=241, Percent_Identity=34.0248962655602, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI87081845, Length=260, Percent_Identity=33.4615384615385, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=31.8897637795276, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1786507, Length=264, Percent_Identity=29.5454545454545, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788381, Length=320, Percent_Identity=28.125, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI87081977, Length=175, Percent_Identity=37.1428571428571, Blast_Score=97, Evalue=5e-21,
Organism=Escherichia coli, GI1788849, Length=250, Percent_Identity=30.4, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI87082096, Length=250, Percent_Identity=29.6, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1787262, Length=177, Percent_Identity=35.0282485875706, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=35.0877192982456, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787802, Length=187, Percent_Identity=28.3422459893048, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=35.672514619883, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787816, Length=181, Percent_Identity=34.8066298342541, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=30.5555555555556, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1789650, Length=479, Percent_Identity=22.964509394572, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=31.7073170731707, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=192, Percent_Identity=27.6041666666667, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI87081974, Length=89, Percent_Identity=38.2022471910112, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 83523; Mature: 83392

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCEATSENTIGAAPDGTRYGANLAEGVLASERTVLRLITRNTPLPELLDEVCRRAEALL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GEGASCSILLLDAEGVRARVGGAPSLPEHFSAAIDGVAIGPRAGSCGTAMFERRLVVVED
CCCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHCCEEECCCCCCCHHHHHHCCEEEEEE
IETDPLWADFRHLALPLGLRACWSVPFENDAGVVLGAFAVYYRKSRRPSAEEEAMLRDIS
CCCCCCHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RSVGLAVHQDTMAQRLAHSEEHHRLVVDHLIEGIVVQSRAGIVLACNPSAQRILRATPQI
HHHCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCEEEEECCHHHHHHHHCHHH
VGRSIQTVMVRAYHEDGSVVTEAVRPTNQVLATGKPMLGVTIGLELIGGDIVWITENVVP
HCCHHHHHEEEEECCCCCHHHHHHCCCHHHHHCCCCEEEEEEEEEEECCEEEEEECCCEE
IIKAGESEPSSVLISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTS
EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SGMGELVSVAVLFVDLDGFKKVNDTAGHEAGDALLCSVAERLAACISPEDTLARVGGDEF
CCHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCEE
VIVVSAYENTGHLIGLAQRILDMIAVPFAVADNEYYLGASIGISRFPEDGQDVATLLRNA
EEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCCCHHHHHHHHHCC
DSAMYYAKQRGRNNFQFFTAELNRQLQRRFTIEQSLRRALAGNELSLVYQPIVDSQDGRT
CHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
IGAEALLRWYNSELGNVSPGEFIPVAEDAGLIVEIGNFVLTRACEQVAQWRRTLAPELIV
HHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEE
AVNLSPRQFNDGLVERIQRCLLQTGLEPAALELEITERLLMSDSETVLPMLSALNAMGVR
EEECCCHHCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHCCEE
ISVDDFGTGYSSLSYLKRFPLHNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTA
EEECCCCCCHHHHHHHHHCCCCCEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
EGVETAEQAAFLRAIDCDKQQGYFYSRPVGASAYARSLWDAQVGLADAS
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TCEATSENTIGAAPDGTRYGANLAEGVLASERTVLRLITRNTPLPELLDEVCRRAEALL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GEGASCSILLLDAEGVRARVGGAPSLPEHFSAAIDGVAIGPRAGSCGTAMFERRLVVVED
CCCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHCCEEECCCCCCCHHHHHHCCEEEEEE
IETDPLWADFRHLALPLGLRACWSVPFENDAGVVLGAFAVYYRKSRRPSAEEEAMLRDIS
CCCCCCHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RSVGLAVHQDTMAQRLAHSEEHHRLVVDHLIEGIVVQSRAGIVLACNPSAQRILRATPQI
HHHCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCEEEEECCHHHHHHHHCHHH
VGRSIQTVMVRAYHEDGSVVTEAVRPTNQVLATGKPMLGVTIGLELIGGDIVWITENVVP
HCCHHHHHEEEEECCCCCHHHHHHCCCHHHHHCCCCEEEEEEEEEEECCEEEEEECCCEE
IIKAGESEPSSVLISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTS
EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SGMGELVSVAVLFVDLDGFKKVNDTAGHEAGDALLCSVAERLAACISPEDTLARVGGDEF
CCHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCEE
VIVVSAYENTGHLIGLAQRILDMIAVPFAVADNEYYLGASIGISRFPEDGQDVATLLRNA
EEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCCCHHHHHHHHHCC
DSAMYYAKQRGRNNFQFFTAELNRQLQRRFTIEQSLRRALAGNELSLVYQPIVDSQDGRT
CHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
IGAEALLRWYNSELGNVSPGEFIPVAEDAGLIVEIGNFVLTRACEQVAQWRRTLAPELIV
HHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEE
AVNLSPRQFNDGLVERIQRCLLQTGLEPAALELEITERLLMSDSETVLPMLSALNAMGVR
EEECCCHHCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHCCEE
ISVDDFGTGYSSLSYLKRFPLHNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTA
EEECCCCCCHHHHHHHHHCCCCCEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
EGVETAEQAAFLRAIDCDKQQGYFYSRPVGASAYARSLWDAQVGLADAS
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]