Definition Burkholderia xenovorans LB400 chromosome 1, complete sequence.
Accession NC_007951
Length 4,895,836

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The map label for this gene is 91784145

Identifier: 91784145

GI number: 91784145

Start: 3080012

End: 3081217

Strand: Reverse

Name: 91784145

Synonym: Bxe_A1656

Alternate gene names: NA

Gene position: 3081217-3080012 (Counterclockwise)

Preceding gene: 91784146

Following gene: 91784144

Centisome position: 62.94

GC content: 71.31

Gene sequence:

>1206_bases
ATGGCGCTGCATGAATCGGTACTGGAAGAGTTCGGACTCGCGCCGCTGTGGGTGCGTCGCGGGATGGCGGCGGCCCCGCA
AGCGGCTGCTGAAGCGCAGGCCGAAGGCGGAGCCGGAGCCGACGCCGGAGCCGCGCAGGGCGTTGGCGACACGGCCGGCC
AGGGTGCGAGCCGCGACGATGTGCGCGGTGCGGCGCGCGGGTTGCCGCCCGCTGCGCGCTCGCATTCGCGGGAAGCCGCG
CCGGCCTCTGCGCTTGCGGAGGAGGAAACTGCGCCGCCCGCCGCGCGCTCGCGGGAGAGTGGGTCGGCGGCAGTGCGCAC
GCAGGAAACCGCGCCGGCCGCGTCGCGAGCAGGCGAGGCACGACGGGCCGATGCCGCGCCGGCACAGAGCGAACGCCGCG
CGCCGCCTGCACAGGATGCGGCGCAGGCGGCGCCAGGCCGGGCACAAACGCCCGCCGAAACGCGTCAGCCAAAGCAACCG
CAGCAGCCATCCCGCACACCCGAGCCGCCGGCATTCGACGCCCCACCGGAAGATGATTTCGCATGGTTCGACGACCTGCC
GACCCACGCGCCAGCAGACGCAGCCGACGCCGCGCCCCCAGCCACCGCGATCCACACCCTCGACTGGGACGCGCTGAGCG
AGCGCGTCGCCGCCTGCCGGCTTTGCCGTCTGTGCGAGAAGCGCACGAACACGGTGTTCGGCGTCGGCGATCGGGGTGCC
GACTGGATGCTGATCGGCGAAGCGCCGGGTGAGAACGAGGACCGTCTGGGCGAGCCGTTCGTCGGCCAGGCCGGCAAGCT
GCTCGACAACATGCTGCGTTCGCTGACGCTCGCGCGCGACGCCAACGTCTATATCGCCAACGTGATCAAATGCCGGCCGC
CCGGCAACCGCAATCCCGAACCGGACGAAGTCGCGCGTTGCGAGCCGTATCTGCAACGTCAGGTGGCGCTGGTCAAGCCG
AAGCTGATCGTCGCGCTCGGCCGCTTTGCGGCGCAAAGCCTGCTGAAAACCGACGCGAGCATTTCGTCGCTGCGAGGCCG
CGTGCACGAATACGAAGGGGTGCCCGTGATCGTGACGTACCACCCGGCGTATCTGCTGCGCAGCCTGCCCGACAAGGCGA
AAGCCTGGGCCGACCTGTGCCTCGCGCGCGACACGTGGCGCGCGGCGGGCGGTGTGCCATCGAACGCGTCGAACGCGTCG
AAGTGA

Upstream 100 bases:

>100_bases
TTTGCGTCGATCGGCCGGCGCAAAAACTATTATCCGGCGCGACATCGCAGCCGGGAGGACGCCATCGTGATGCGTTTCTC
GTTTGCCTCGGAGGGCGCAG

Downstream 100 bases:

>100_bases
CGACTGCCGGGGAGCCGGCGGCCGGTTCCTCCGGCGCGCCCGGCATCGATGCCGCGAGTCGCGCTACGCTGCTCGACAGC
CTGCATGATTCTGCCGTGCG

Product: Phage SPO1 DNA polymerase-related protein

Products: NA

Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; Uracil DNA Glycosylase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase C-Terminal Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDDVRGAARGLPPAARSHSREAA
PASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEARRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQP
QQPSRTPEPPAFDAPPEDDFAWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGA
DWMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKP
KLIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTYHPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNAS
K

Sequences:

>Translated_401_residues
MALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDDVRGAARGLPPAARSHSREAA
PASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEARRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQP
QQPSRTPEPPAFDAPPEDDFAWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGA
DWMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKP
KLIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTYHPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNAS
K
>Mature_400_residues
ALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDDVRGAARGLPPAARSHSREAAP
ASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEARRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQPQ
QPSRTPEPPAFDAPPEDDFAWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGAD
WMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKPK
LIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTYHPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNASK

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42184; Mature: 42053

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDD
CCHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
VRGAARGLPPAARSHSREAAPASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEA
HHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHCCCCCCCEEEECCCCCHHHHCCCH
RRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQPQQPSRTPEPPAFDAPPEDDF
HHCCCCCCHHHCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
AWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGA
CHHHCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
DWMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPE
CEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC
PDEVARCEPYLQRQVALVKPKLIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTY
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
HPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNASK
CHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDD
CHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
VRGAARGLPPAARSHSREAAPASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEA
HHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHCCCCCCCEEEECCCCCHHHHCCCH
RRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQPQQPSRTPEPPAFDAPPEDDF
HHCCCCCCHHHCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
AWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGA
CHHHCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
DWMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPE
CEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC
PDEVARCEPYLQRQVALVKPKLIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTY
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
HPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNASK
CHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA