| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91784145
Identifier: 91784145
GI number: 91784145
Start: 3080012
End: 3081217
Strand: Reverse
Name: 91784145
Synonym: Bxe_A1656
Alternate gene names: NA
Gene position: 3081217-3080012 (Counterclockwise)
Preceding gene: 91784146
Following gene: 91784144
Centisome position: 62.94
GC content: 71.31
Gene sequence:
>1206_bases ATGGCGCTGCATGAATCGGTACTGGAAGAGTTCGGACTCGCGCCGCTGTGGGTGCGTCGCGGGATGGCGGCGGCCCCGCA AGCGGCTGCTGAAGCGCAGGCCGAAGGCGGAGCCGGAGCCGACGCCGGAGCCGCGCAGGGCGTTGGCGACACGGCCGGCC AGGGTGCGAGCCGCGACGATGTGCGCGGTGCGGCGCGCGGGTTGCCGCCCGCTGCGCGCTCGCATTCGCGGGAAGCCGCG CCGGCCTCTGCGCTTGCGGAGGAGGAAACTGCGCCGCCCGCCGCGCGCTCGCGGGAGAGTGGGTCGGCGGCAGTGCGCAC GCAGGAAACCGCGCCGGCCGCGTCGCGAGCAGGCGAGGCACGACGGGCCGATGCCGCGCCGGCACAGAGCGAACGCCGCG CGCCGCCTGCACAGGATGCGGCGCAGGCGGCGCCAGGCCGGGCACAAACGCCCGCCGAAACGCGTCAGCCAAAGCAACCG CAGCAGCCATCCCGCACACCCGAGCCGCCGGCATTCGACGCCCCACCGGAAGATGATTTCGCATGGTTCGACGACCTGCC GACCCACGCGCCAGCAGACGCAGCCGACGCCGCGCCCCCAGCCACCGCGATCCACACCCTCGACTGGGACGCGCTGAGCG AGCGCGTCGCCGCCTGCCGGCTTTGCCGTCTGTGCGAGAAGCGCACGAACACGGTGTTCGGCGTCGGCGATCGGGGTGCC GACTGGATGCTGATCGGCGAAGCGCCGGGTGAGAACGAGGACCGTCTGGGCGAGCCGTTCGTCGGCCAGGCCGGCAAGCT GCTCGACAACATGCTGCGTTCGCTGACGCTCGCGCGCGACGCCAACGTCTATATCGCCAACGTGATCAAATGCCGGCCGC CCGGCAACCGCAATCCCGAACCGGACGAAGTCGCGCGTTGCGAGCCGTATCTGCAACGTCAGGTGGCGCTGGTCAAGCCG AAGCTGATCGTCGCGCTCGGCCGCTTTGCGGCGCAAAGCCTGCTGAAAACCGACGCGAGCATTTCGTCGCTGCGAGGCCG CGTGCACGAATACGAAGGGGTGCCCGTGATCGTGACGTACCACCCGGCGTATCTGCTGCGCAGCCTGCCCGACAAGGCGA AAGCCTGGGCCGACCTGTGCCTCGCGCGCGACACGTGGCGCGCGGCGGGCGGTGTGCCATCGAACGCGTCGAACGCGTCG AAGTGA
Upstream 100 bases:
>100_bases TTTGCGTCGATCGGCCGGCGCAAAAACTATTATCCGGCGCGACATCGCAGCCGGGAGGACGCCATCGTGATGCGTTTCTC GTTTGCCTCGGAGGGCGCAG
Downstream 100 bases:
>100_bases CGACTGCCGGGGAGCCGGCGGCCGGTTCCTCCGGCGCGCCCGGCATCGATGCCGCGAGTCGCGCTACGCTGCTCGACAGC CTGCATGATTCTGCCGTGCG
Product: Phage SPO1 DNA polymerase-related protein
Products: NA
Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; Uracil DNA Glycosylase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase C-Terminal Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDDVRGAARGLPPAARSHSREAA PASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEARRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQP QQPSRTPEPPAFDAPPEDDFAWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGA DWMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKP KLIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTYHPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNAS K
Sequences:
>Translated_401_residues MALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDDVRGAARGLPPAARSHSREAA PASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEARRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQP QQPSRTPEPPAFDAPPEDDFAWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGA DWMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKP KLIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTYHPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNAS K >Mature_400_residues ALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDDVRGAARGLPPAARSHSREAAP ASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEARRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQPQ QPSRTPEPPAFDAPPEDDFAWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGAD WMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKPK LIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTYHPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNASK
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42184; Mature: 42053
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDD CCHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH VRGAARGLPPAARSHSREAAPASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEA HHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHCCCCCCCEEEECCCCCHHHHCCCH RRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQPQQPSRTPEPPAFDAPPEDDF HHCCCCCCHHHCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC AWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGA CHHHCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC DWMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPE CEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC PDEVARCEPYLQRQVALVKPKLIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTY HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE HPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNASK CHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure ALHESVLEEFGLAPLWVRRGMAAAPQAAAEAQAEGGAGADAGAAQGVGDTAGQGASRDD CHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH VRGAARGLPPAARSHSREAAPASALAEEETAPPAARSRESGSAAVRTQETAPAASRAGEA HHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHCCCCCCCEEEECCCCCHHHHCCCH RRADAAPAQSERRAPPAQDAAQAAPGRAQTPAETRQPKQPQQPSRTPEPPAFDAPPEDDF HHCCCCCCHHHCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC AWFDDLPTHAPADAADAAPPATAIHTLDWDALSERVAACRLCRLCEKRTNTVFGVGDRGA CHHHCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC DWMLIGEAPGENEDRLGEPFVGQAGKLLDNMLRSLTLARDANVYIANVIKCRPPGNRNPE CEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC PDEVARCEPYLQRQVALVKPKLIVALGRFAAQSLLKTDASISSLRGRVHEYEGVPVIVTY HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE HPAYLLRSLPDKAKAWADLCLARDTWRAAGGVPSNASNASK CHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA