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The map label for this gene is ycaN [H]

Identifier: 91783793

GI number: 91783793

Start: 2695784

End: 2696713

Strand: Direct

Name: ycaN [H]

Synonym: Bxe_A2019

Alternate gene names: 91783793

Gene position: 2695784-2696713 (Clockwise)

Preceding gene: 91783791

Following gene: 91783795

Centisome position: 55.06

GC content: 65.27

Gene sequence:

>930_bases
ATGCCATTTGACGAGCGCATGCTGAACGGCATGGGCGTCTTGACGGCGATCGTCGATTCGGGCAGTTTCGCGGCGGCGGG
CGTTGCGCTCGACATGTCGCAATCCGGGGTCAGCCGTTCGGTCGCGCGGCTCGAAGCGCGTCTCGGCATCCGGCTCTTCG
ATCGCACCACGCGCTCGGTCGTGCTGACCGACGAAGGCCGGCGCTTCTACGAACAGATCGTGCCGTTGCTGGGTGGACTC
GAAGAAGCGGCGGCCTCCGCCGCGCAGGGCGCGACCGCTGTTCGCGGACGTTTGCGCGTGAACATGGACCCGTTCTTTTC
GCGCCTCGTGCTGGGGCCGAGGTTGGGCGGCTTTATCGACAGGCATCCCGATCTGCAGCTCGAACTGATCACCCGCGACC
AGTTGGGCGACATGGTCGCCGACGGATTCGATCTCGCGATCCGCTTCGGCGACCCGCCGGTGTCGACGCTGATTGCCCGC
AAGCTGCTGGACACGCGGATTCTCACCGTGGCCGCGCCGTCGTATCTGAAGAAGCACGGACACCCGGCGAACCCGGCCGA
GCTCGAAAGCGGCAAGCACGTGTGCATCAAGTTTCGCGATCCGCTGACAGGCTACCCGTTCAGCTGGGAATTTCATCGCG
GCCGCAAGAAGATCGTGGTGACGCCGCAAGGCCGTTTGACCGTCAACGACGTGGGCACCTTGCACAGCGCCTGCGTAGCG
GGCCAGGGCGTGGCGCAGATTCTCGAACTCGGCGCCGAATCGCTGGTGGCGAGCGGCAAACTGGTCGCGCTGTTTCCCGA
CTGGTGCGACGAGGTTTATCCGCTGTATGCGCTCTACCCTTCGCGGCATCATCCGCCGGCCAAGGTTCGGGCGTTCTTCG
AATTTATCGTTTCGCTCACGGGTGGCGCGCCGCGCGAACCGGCGGCCTGA

Upstream 100 bases:

>100_bases
TTCGGCCTTGCCGGACGGCATTTCGCCGCGCCGGCGCGTGAATTCAAACGGACTTTCGCGTTAGCATGTCACGCATTAAT
GCATAACAAAGGACTATCAC

Downstream 100 bases:

>100_bases
GTGCGGTTGCGGCGACGTGCGCGCGCGGCCGCTCGCGTCAGGAAATCGTGTAGCGGTTTTGCGGGCCGCCGAGATACAGG
CCGCGAGCGAGCGTCAGGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MPFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSVVLTDEGRRFYEQIVPLLGGL
EEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFIDRHPDLQLELITRDQLGDMVADGFDLAIRFGDPPVSTLIAR
KLLDTRILTVAAPSYLKKHGHPANPAELESGKHVCIKFRDPLTGYPFSWEFHRGRKKIVVTPQGRLTVNDVGTLHSACVA
GQGVAQILELGAESLVASGKLVALFPDWCDEVYPLYALYPSRHHPPAKVRAFFEFIVSLTGGAPREPAA

Sequences:

>Translated_309_residues
MPFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSVVLTDEGRRFYEQIVPLLGGL
EEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFIDRHPDLQLELITRDQLGDMVADGFDLAIRFGDPPVSTLIAR
KLLDTRILTVAAPSYLKKHGHPANPAELESGKHVCIKFRDPLTGYPFSWEFHRGRKKIVVTPQGRLTVNDVGTLHSACVA
GQGVAQILELGAESLVASGKLVALFPDWCDEVYPLYALYPSRHHPPAKVRAFFEFIVSLTGGAPREPAA
>Mature_308_residues
PFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSVVLTDEGRRFYEQIVPLLGGLE
EAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFIDRHPDLQLELITRDQLGDMVADGFDLAIRFGDPPVSTLIARK
LLDTRILTVAAPSYLKKHGHPANPAELESGKHVCIKFRDPLTGYPFSWEFHRGRKKIVVTPQGRLTVNDVGTLHSACVAG
QGVAQILELGAESLVASGKLVALFPDWCDEVYPLYALYPSRHHPPAKVRAFFEFIVSLTGGAPREPAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=31.5254237288136, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=31.1418685121107, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=29.9003322259136, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=31.9587628865979, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=31.3993174061433, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1789440, Length=299, Percent_Identity=29.0969899665552, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787589, Length=279, Percent_Identity=27.2401433691756, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788706, Length=304, Percent_Identity=29.6052631578947, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1789173, Length=291, Percent_Identity=28.5223367697594, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786448, Length=294, Percent_Identity=27.5510204081633, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI157672245, Length=141, Percent_Identity=34.0425531914894, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790011, Length=292, Percent_Identity=23.2876712328767, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787601, Length=182, Percent_Identity=25.8241758241758, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=127, Percent_Identity=33.8582677165354, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789204, Length=126, Percent_Identity=29.3650793650794, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1787879, Length=304, Percent_Identity=26.3157894736842, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33557; Mature: 33426

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV
CCCHHHHHHCHHHHHHEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHCEEEECCCCCEE
VLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID
EEECCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCEEEECCCHHHHHHHHCCCCCCCCC
RHPDLQLELITRDQLGDMVADGFDLAIRFGDPPVSTLIARKLLDTRILTVAAPSYLKKHG
CCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHEEECHHHHHHCC
HPANPAELESGKHVCIKFRDPLTGYPFSWEFHRGRKKIVVTPQGRLTVNDVGTLHSACVA
CCCCCHHHCCCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCEEECHHHHHHHHHHC
GQGVAQILELGAESLVASGKLVALFPDWCDEVYPLYALYPSRHHPPAKVRAFFEFIVSLT
CCHHHHHHHHCHHHHHHCCCEEEECCHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHC
GGAPREPAA
CCCCCCCCC
>Mature Secondary Structure 
PFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV
CCHHHHHHCHHHHHHEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHCEEEECCCCCEE
VLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID
EEECCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCEEEECCCHHHHHHHHCCCCCCCCC
RHPDLQLELITRDQLGDMVADGFDLAIRFGDPPVSTLIARKLLDTRILTVAAPSYLKKHG
CCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHEEECHHHHHHCC
HPANPAELESGKHVCIKFRDPLTGYPFSWEFHRGRKKIVVTPQGRLTVNDVGTLHSACVA
CCCCCHHHCCCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCEEECHHHHHHHHHHC
GQGVAQILELGAESLVASGKLVALFPDWCDEVYPLYALYPSRHHPPAKVRAFFEFIVSLT
CCHHHHHHHHCHHHHHHCCCEEEECCHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHC
GGAPREPAA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]