| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ydjC [C]
Identifier: 91783745
GI number: 91783745
Start: 2645057
End: 2645854
Strand: Reverse
Name: ydjC [C]
Synonym: Bxe_A2069
Alternate gene names: 91783745
Gene position: 2645854-2645057 (Counterclockwise)
Preceding gene: 91783746
Following gene: 91783743
Centisome position: 54.04
GC content: 66.92
Gene sequence:
>798_bases GTGACCGCCGACGATTTCGGCCTGCACGCGCGAGTCAACGAGGCGGTCGAGCGCGCGCATCGCGACGGCGTGCTGACCGC CGCGAGTCTGATGACCGGTGCGCCGGCCGCCGCCGACGCGGTGACACGCGCCCGCGCTTTGCCGCAACTGCGGGTCGGCC TGCATCTGGTGCTGGCCGACGGCGCCGCGACCGCGCCGCGCGAACGGGTTGCCGCGCTCGTCGACGAACAGGGCCGCTTC GGCAACAACATGGTGTGGGACGGCGTGCGGTTTCTCTGCTTGCCGCATGTGCGCAAGCAGCTCGCGCGTGAGATTCGCGC GCAGTTCGAGGCGTTTGCAAAAACCGGTCTGACGCTCGATCACGTCAACACGCACAAGCATTTTCATTTGCATCCGACGG TGCTCGGACTGATTCTGGACATCGGCCGCGAGTATGGGATGAAGGCCATGCGCCTGCCGTTCGAAGCGAATGCGCCGCTG TGGTTGCGGCCGTGGATCGCGCAGGTCAAGGCGCGTCTGGATCGCGCCGGCATCGCGCATAACGATTACGTGGTCGGAAT CGCCGATAGCGGGCGGATGGATGAAACGGCGTGGCTTGCGGCGCTCACCGATCTGCCGCACGGGGTGGGGGAGATTTATT GCCATCCCGCAGTGGCGGGGGAGCGGGCGTTGAGCGACGGCATGCGGAATTACCGGCACGAAGCGGAACTGCAAGCGCTT CTATCGGCCAGGGTCGCGATGGCGATTCGCCTGGCGGGCGTGCGGGTCGGTGGATTTGGCGACGTGCTGGCTCCCTGA
Upstream 100 bases:
>100_bases CCTGTCGGCGGTTCCACGCCGACGGCGGCGCGCAAGGGCGCGCTGAACGTAATGGATGTCATGGAAACATCCGATGGCGG CTAAGCCACGCGGACTGATC
Downstream 100 bases:
>100_bases AGAGGAACCCGACCGGCCAAGAACTGCCTGGGTATCCGAATGATATGAAAAGTTTTGGCCCATCTTCTTTGCGATCGTAA ACACCCGCCGTTCACGCAGA
Product: phospho-beta-glucosidase, YdjC- like protein, cellobiose degradation
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MTADDFGLHARVNEAVERAHRDGVLTAASLMTGAPAAADAVTRARALPQLRVGLHLVLADGAATAPRERVAALVDEQGRF GNNMVWDGVRFLCLPHVRKQLAREIRAQFEAFAKTGLTLDHVNTHKHFHLHPTVLGLILDIGREYGMKAMRLPFEANAPL WLRPWIAQVKARLDRAGIAHNDYVVGIADSGRMDETAWLAALTDLPHGVGEIYCHPAVAGERALSDGMRNYRHEAELQAL LSARVAMAIRLAGVRVGGFGDVLAP
Sequences:
>Translated_265_residues MTADDFGLHARVNEAVERAHRDGVLTAASLMTGAPAAADAVTRARALPQLRVGLHLVLADGAATAPRERVAALVDEQGRF GNNMVWDGVRFLCLPHVRKQLAREIRAQFEAFAKTGLTLDHVNTHKHFHLHPTVLGLILDIGREYGMKAMRLPFEANAPL WLRPWIAQVKARLDRAGIAHNDYVVGIADSGRMDETAWLAALTDLPHGVGEIYCHPAVAGERALSDGMRNYRHEAELQAL LSARVAMAIRLAGVRVGGFGDVLAP >Mature_264_residues TADDFGLHARVNEAVERAHRDGVLTAASLMTGAPAAADAVTRARALPQLRVGLHLVLADGAATAPRERVAALVDEQGRFG NNMVWDGVRFLCLPHVRKQLAREIRAQFEAFAKTGLTLDHVNTHKHFHLHPTVLGLILDIGREYGMKAMRLPFEANAPLW LRPWIAQVKARLDRAGIAHNDYVVGIADSGRMDETAWLAALTDLPHGVGEIYCHPAVAGERALSDGMRNYRHEAELQALL SARVAMAIRLAGVRVGGFGDVLAP
Specific function: Unknown
COG id: COG3394
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0249 family [H]
Homologues:
Organism=Escherichia coli, GI1788028, Length=268, Percent_Identity=25.7462686567164, Blast_Score=66, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002509 - InterPro: IPR006879 - InterPro: IPR022948 [H]
Pfam domain/function: PF04794 YdjC [H]
EC number: NA
Molecular weight: Translated: 28828; Mature: 28696
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTADDFGLHARVNEAVERAHRDGVLTAASLMTGAPAAADAVTRARALPQLRVGLHLVLAD CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCHHHHHCEEEEEEC GAATAPRERVAALVDEQGRFGNNMVWDGVRFLCLPHVRKQLAREIRAQFEAFAKTGLTLD CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE HVNTHKHFHLHPTVLGLILDIGREYGMKAMRLPFEANAPLWLRPWIAQVKARLDRAGIAH ECCCCCEEEECHHHHHHHHHHHHHHCCHHEECCCCCCCCEEEHHHHHHHHHHHHHCCCCC NDYVVGIADSGRMDETAWLAALTDLPHGVGEIYCHPAVAGERALSDGMRNYRHEAELQAL CCEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHH LSARVAMAIRLAGVRVGGFGDVLAP HHHHHHHHHHHHCEEECCCCCCCCC >Mature Secondary Structure TADDFGLHARVNEAVERAHRDGVLTAASLMTGAPAAADAVTRARALPQLRVGLHLVLAD CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCHHHHHCEEEEEEC GAATAPRERVAALVDEQGRFGNNMVWDGVRFLCLPHVRKQLAREIRAQFEAFAKTGLTLD CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE HVNTHKHFHLHPTVLGLILDIGREYGMKAMRLPFEANAPLWLRPWIAQVKARLDRAGIAH ECCCCCEEEECHHHHHHHHHHHHHHCCHHEECCCCCCCCEEEHHHHHHHHHHHHHCCCCC NDYVVGIADSGRMDETAWLAALTDLPHGVGEIYCHPAVAGERALSDGMRNYRHEAELQAL CCEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHH LSARVAMAIRLAGVRVGGFGDVLAP HHHHHHHHHHHHCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA