Click here to switch to the map view.

The map label for this gene is yqhC [H]

Identifier: 91783614

GI number: 91783614

Start: 2486105

End: 2487052

Strand: Direct

Name: yqhC [H]

Synonym: Bxe_A2201

Alternate gene names: 91783614

Gene position: 2486105-2487052 (Clockwise)

Preceding gene: 91783611

Following gene: 91783615

Centisome position: 50.78

GC content: 65.51

Gene sequence:

>948_bases
ATGGCGTTCAAACACGGGGACCCGGCCGCGCGGCAACGCATGGTGGCCTTGCTCGAAACTCTCGCTCCGGTGGAAGGCTA
CAACCTCACGGTTTTGCCCGACGTGCGCTTCCTGCGTTCGAACCGGCCGCTTAGCCGCACACCCGTGCTGTACGACCCGG
GCGTGGTGATCGTGTGCCAGGGGCGCAAACGGGGCTTTCTCGGCGACACGGTGTACGTGTATGACGCGCAGCACTACCTG
GCCGTTTCGGTGCCGGTGCCGTTCTCGATGGAAACCGAAGCGAGCGCGGCGAAGCCTTTGCTCGCGATCTATTTGCGCCT
CGACTTCAAGGTCGCCGCCGATCTGATGCTGCAACTCGACGAGCGCGACGCGGGCGTGCCGGCCGAGCCGCGCGGCATGA
TGTCGACGCCGCTCGATGCCAAGCTGAGCGCCACGGTGCTGCGCTTTCTGGAAGCGATGAGCGTGCCGCTGGAGGCGGAG
TTGCTCGGACCGGCGCTCGTACGCGAAATCTACTTCCACGTGCTGACCGGCGAGCAGGGCGGATCGATGCGTGCCGCGCT
AACCGCACAAGGCCAGTTCGCGAGGATCGCCAGAGTGATCCGCAAGATTCACGCGTGCTATCGCGAACCGCTCGACGTTG
GCCAACTCGCGCTCGAAGCAAACATGAGCGTGCCCACTTTGCACGCGCACTTCAAGGCGGTGACGCGCACCTCGCCGATG
CAATATCTGAAGTCGACGCGGCTTCATCAGGCGCGCCTTCTGATGGTGAGAAACGAGGTGACGGCGGCGTCGGCGTCCGT
GCAGGTCGGCTATGAGAGCGCTTCGCAGTTCAGCCGCGAGTTCAGGCGCCTGTTCGGCCGCAGCCCGGTGGAGGAGGCCG
AGCGGATGCGCAGAACCTTCGCCATTCCGCCGCCCGCGCCGGGCTCGATCTTCGTCGCGTCGCACTGA

Upstream 100 bases:

>100_bases
CGGTTCGTCTGCGGTGATTGCCTGATCCTATGAGCAGATGGATTTTCCAGCGCGATGGTGGCACATTGCAGTCTGGTTGA
CCACGTTGACAGGGCTCAGA

Downstream 100 bases:

>100_bases
ACGGGCTAATGGGCTAACGAGCTAACGGGCTGGCCCGGTGCTCATGACGCGAACCGTGCCTGTCCGCTCCCGCGCGCCGT
CGATACACTTTGAACCCATG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MAFKHGDPAARQRMVALLETLAPVEGYNLTVLPDVRFLRSNRPLSRTPVLYDPGVVIVCQGRKRGFLGDTVYVYDAQHYL
AVSVPVPFSMETEASAAKPLLAIYLRLDFKVAADLMLQLDERDAGVPAEPRGMMSTPLDAKLSATVLRFLEAMSVPLEAE
LLGPALVREIYFHVLTGEQGGSMRAALTAQGQFARIARVIRKIHACYREPLDVGQLALEANMSVPTLHAHFKAVTRTSPM
QYLKSTRLHQARLLMVRNEVTAASASVQVGYESASQFSREFRRLFGRSPVEEAERMRRTFAIPPPAPGSIFVASH

Sequences:

>Translated_315_residues
MAFKHGDPAARQRMVALLETLAPVEGYNLTVLPDVRFLRSNRPLSRTPVLYDPGVVIVCQGRKRGFLGDTVYVYDAQHYL
AVSVPVPFSMETEASAAKPLLAIYLRLDFKVAADLMLQLDERDAGVPAEPRGMMSTPLDAKLSATVLRFLEAMSVPLEAE
LLGPALVREIYFHVLTGEQGGSMRAALTAQGQFARIARVIRKIHACYREPLDVGQLALEANMSVPTLHAHFKAVTRTSPM
QYLKSTRLHQARLLMVRNEVTAASASVQVGYESASQFSREFRRLFGRSPVEEAERMRRTFAIPPPAPGSIFVASH
>Mature_314_residues
AFKHGDPAARQRMVALLETLAPVEGYNLTVLPDVRFLRSNRPLSRTPVLYDPGVVIVCQGRKRGFLGDTVYVYDAQHYLA
VSVPVPFSMETEASAAKPLLAIYLRLDFKVAADLMLQLDERDAGVPAEPRGMMSTPLDAKLSATVLRFLEAMSVPLEAEL
LGPALVREIYFHVLTGEQGGSMRAALTAQGQFARIARVIRKIHACYREPLDVGQLALEANMSVPTLHAHFKAVTRTSPMQ
YLKSTRLHQARLLMVRNEVTAASASVQVGYESASQFSREFRRLFGRSPVEEAERMRRTFAIPPPAPGSIFVASH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=268, Percent_Identity=44.4029850746269, Blast_Score=243, Evalue=1e-65,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34847; Mature: 34716

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS00104 EPSP_SYNTHASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKHGDPAARQRMVALLETLAPVEGYNLTVLPDVRFLRSNRPLSRTPVLYDPGVVIVCQ
CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCCCCCCCEEECCCEEEEEC
GRKRGFLGDTVYVYDAQHYLAVSVPVPFSMETEASAAKPLLAIYLRLDFKVAADLMLQLD
CCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHCCCEEEEEEHHHHHHHHHHHEEC
ERDAGVPAEPRGMMSTPLDAKLSATVLRFLEAMSVPLEAELLGPALVREIYFHVLTGEQG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHEECCCC
GSMRAALTAQGQFARIARVIRKIHACYREPLDVGQLALEANMSVPTLHAHFKAVTRTSPM
CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCHH
QYLKSTRLHQARLLMVRNEVTAASASVQVGYESASQFSREFRRLFGRSPVEEAERMRRTF
HHHHHHHHHHHHHHHHHCCHHHCCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHEE
AIPPPAPGSIFVASH
CCCCCCCCCEEEECC
>Mature Secondary Structure 
AFKHGDPAARQRMVALLETLAPVEGYNLTVLPDVRFLRSNRPLSRTPVLYDPGVVIVCQ
CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCCCCCCCEEECCCEEEEEC
GRKRGFLGDTVYVYDAQHYLAVSVPVPFSMETEASAAKPLLAIYLRLDFKVAADLMLQLD
CCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHCCCEEEEEEHHHHHHHHHHHEEC
ERDAGVPAEPRGMMSTPLDAKLSATVLRFLEAMSVPLEAELLGPALVREIYFHVLTGEQG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHEECCCC
GSMRAALTAQGQFARIARVIRKIHACYREPLDVGQLALEANMSVPTLHAHFKAVTRTSPM
CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCHH
QYLKSTRLHQARLLMVRNEVTAASASVQVGYESASQFSREFRRLFGRSPVEEAERMRRTF
HHHHHHHHHHHHHHHHHCCHHHCCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHEE
AIPPPAPGSIFVASH
CCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]