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The map label for this gene is ycfH [C]

Identifier: 91783555

GI number: 91783555

Start: 2416501

End: 2417292

Strand: Direct

Name: ycfH [C]

Synonym: Bxe_A2260

Alternate gene names: 91783555

Gene position: 2416501-2417292 (Clockwise)

Preceding gene: 91783554

Following gene: 91783556

Centisome position: 49.36

GC content: 63.89

Gene sequence:

>792_bases
ATGTTTGTCGATTCGCATTGCCATATCAACTTCGAAGGACTCGCCGAGCGCTTGCCGCAGGTGCTCGAAAACATGCGCAG
CCATTCGGTCACGCATGCGCTGTGCGTGTCCGTCGATCTGGAGACGCTGCCTGCCGTGCTGGATATCGCCAGCCGGTACG
AGAACGTGTACGCGTCGGTCGGCGTGCATCCGGATCACGAGCACATGCGCGAGCCGAGCGTCGCCGAACTGGTCGAACTG
GCCGCGCATCCCAAGGTGGTCGCGATCGGCGAGACCGGTCTCGACTACTACCGGCTGGAAGGCCGCACGATCGCCGACAT
GGAATGGCAGCGCGAGCGCTTTCGCAACCATATCCGGGCGGCGCATGCCACGCACAAGCCGCTGATCATCCATACGCGTT
CGTCGTCGGCAGACACGCTGCGCATCATGGCCGAGGAGCGCGCGAGCGAGCCGGGCGGCGTGATGCATTGCTTCACCGAA
CCGTGGCCGGTCGCCGAACAGGCGCTGGCGCAGAATTTTTACATCTCGCTGTCGGGCATCGTCACATTCAAAAGCGCGAC
CGACGTGCAGGACGTCGCGCGCCGCGTGCCGCTCGAGCGTTTGCTGATCGAAACCGACTCGCCGTACCTCGCGCCCGTGC
CGTATCGCGGCAAGCCTAATGAACCTGCCTACGTAAGTTATGTCGGACGGTTCATCGCGCAGCAACGCGAGATGCCCGAA
GCGGCGCTGGCCGCCGCGACCACGCAGAACTTCTTCCGCCTTTTCAAGATCCCGGCGCCCACTGGCGCGTGA

Upstream 100 bases:

>100_bases
GTGGAGCGCGACCTGGTGATTCTCGGCAAGCGCCTGGACGTCACCGGCAGCACCGCAGCCGCCTGATTCATCTCGAGCCA
GCCCTACGCAGGACATCACC

Downstream 100 bases:

>100_bases
GACGTAAAGTCGATAAATATCAAAAGGATAGGGACGTTTCCTAAAGTTAAATATGAGAGAAATTTCGATGTCGGATACCG
TACTCCAAGACACGTCGGCA

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MFVDSHCHINFEGLAERLPQVLENMRSHSVTHALCVSVDLETLPAVLDIASRYENVYASVGVHPDHEHMREPSVAELVEL
AAHPKVVAIGETGLDYYRLEGRTIADMEWQRERFRNHIRAAHATHKPLIIHTRSSSADTLRIMAEERASEPGGVMHCFTE
PWPVAEQALAQNFYISLSGIVTFKSATDVQDVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAQQREMPE
AALAAATTQNFFRLFKIPAPTGA

Sequences:

>Translated_263_residues
MFVDSHCHINFEGLAERLPQVLENMRSHSVTHALCVSVDLETLPAVLDIASRYENVYASVGVHPDHEHMREPSVAELVEL
AAHPKVVAIGETGLDYYRLEGRTIADMEWQRERFRNHIRAAHATHKPLIIHTRSSSADTLRIMAEERASEPGGVMHCFTE
PWPVAEQALAQNFYISLSGIVTFKSATDVQDVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAQQREMPE
AALAAATTQNFFRLFKIPAPTGA
>Mature_263_residues
MFVDSHCHINFEGLAERLPQVLENMRSHSVTHALCVSVDLETLPAVLDIASRYENVYASVGVHPDHEHMREPSVAELVEL
AAHPKVVAIGETGLDYYRLEGRTIADMEWQRERFRNHIRAAHATHKPLIIHTRSSSADTLRIMAEERASEPGGVMHCFTE
PWPVAEQALAQNFYISLSGIVTFKSATDVQDVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAQQREMPE
AALAAATTQNFFRLFKIPAPTGA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=273, Percent_Identity=27.8388278388278, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=26.8939393939394, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=26.8939393939394, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=27.037037037037, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI225903439, Length=180, Percent_Identity=30.5555555555556, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI14042943, Length=180, Percent_Identity=30.5555555555556, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=25.8687258687259, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=25.6637168141593, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1787342, Length=266, Percent_Identity=45.4887218045113, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI48994985, Length=235, Percent_Identity=31.9148936170213, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI87082439, Length=262, Percent_Identity=28.2442748091603, Blast_Score=111, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=26.4084507042254, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17565396, Length=311, Percent_Identity=27.6527331189711, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17543026, Length=303, Percent_Identity=26.7326732673267, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=24.904214559387, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221330018, Length=270, Percent_Identity=27.4074074074074, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24586117, Length=270, Percent_Identity=27.4074074074074, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24648690, Length=219, Percent_Identity=27.8538812785388, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 29467; Mature: 29467

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHINFEGLAERLPQVLENMRSHSVTHALCVSVDLETLPAVLDIASRYENVYASV
CEECCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHEEECCHHHHHHHHHHHHHHHHHHHCC
GVHPDHEHMREPSVAELVELAAHPKVVAIGETGLDYYRLEGRTIADMEWQRERFRNHIRA
CCCCCHHHHCCCCHHHHHHHHCCCCEEEECCCCCCEEEECCCEEECHHHHHHHHHHHHHH
AHATHKPLIIHTRSSSADTLRIMAEERASEPGGVMHCFTEPWPVAEQALAQNFYISLSGI
HHCCCCCEEEEECCCCCCHHHHEEHHHCCCCCCEEEECCCCCCHHHHHHHHHHEEEEEEE
VTFKSATDVQDVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAQQREMPE
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
AALAAATTQNFFRLFKIPAPTGA
HHHHHHHHHHHHHEEECCCCCCC
>Mature Secondary Structure
MFVDSHCHINFEGLAERLPQVLENMRSHSVTHALCVSVDLETLPAVLDIASRYENVYASV
CEECCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHEEECCHHHHHHHHHHHHHHHHHHHCC
GVHPDHEHMREPSVAELVELAAHPKVVAIGETGLDYYRLEGRTIADMEWQRERFRNHIRA
CCCCCHHHHCCCCHHHHHHHHCCCCEEEECCCCCCEEEECCCEEECHHHHHHHHHHHHHH
AHATHKPLIIHTRSSSADTLRIMAEERASEPGGVMHCFTEPWPVAEQALAQNFYISLSGI
HHCCCCCEEEEECCCCCCHHHHEEHHHCCCCCCEEEECCCCCCHHHHHHHHHHEEEEEEE
VTFKSATDVQDVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAQQREMPE
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
AALAAATTQNFFRLFKIPAPTGA
HHHHHHHHHHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]