Click here to switch to the map view.

The map label for this gene is nlpD [C]

Identifier: 91783465

GI number: 91783465

Start: 2308820

End: 2309755

Strand: Direct

Name: nlpD [C]

Synonym: Bxe_A2351

Alternate gene names: 91783465

Gene position: 2308820-2309755 (Clockwise)

Preceding gene: 91783464

Following gene: 91783466

Centisome position: 47.16

GC content: 64.74

Gene sequence:

>936_bases
ATGAGTATGTTGCGCGCGATGCAAAGAACCAGACTGAATGCCCCCATGACCGTAACCCAGCGTAGCGTGTGCGTGCTCGC
CTTGTCCCTGTTGATGACGGCGTGTGCGTCGCGGCTCGATCAGGCGCCGGTCGTCGACCGCTCCGGCGGCGGCACGCTCA
GCACGCAAGCTACGCAACCGGCCGTGCCGCTCGGGCCGCCGCCGCCGGGCTACTATCGCGTAAAGCCGGGCGACACGCTG
TATCGGATCGCGTTGGAGAACGGCCAGAACTACCGCGACATTTCGGCGTGGAACAATCTGACCAACCCGAATCAGATCGA
AGTCGACCAGTTGCTGCGCGTCGTGCCACCGGGCGCGAATACCGCGGCGCTCACGCCGGGTGTTTCGACCGCGCCGATCG
GCGGCGGCGCTATGGTGCAAAGCGCGCCGCTCGGCAGCACGCCGCCGTCCACGGGCGCGACCGCAGGTGTCGCGGCACCG
CCGCTCTATGGTTCGGCTGCGAACAACGCGTCGTCGGCGCCGCCTGCCAGCGCGGGCGCGGCGAGCGACTCGAACGCCGG
CGCGTCCGGCAACGTGACCTTCGCATGGCCGGTGCGCGGGCCGCTGCTCGGCACCTTCAACGACTCGACCAACAAGGGCG
TGAATATCGGCGGCGCCGCCGGCGATCCGGTGAAAGCTTCGGCGGATGGCCGCGTGGTTTATGCCGGAAATGGGCTGCGT
GGTTACGGCAATCTCATTATCATCAAGCATGACGCAACTTATCTCACCGCGTATGCACACAACCGCGCTTTGATGGTAAA
AGAGGGGGATGCGGTGACGAAGGGGCAGAAGATCGCTGAGATGGGCAATAGCGATTCCGACCGCGTGATGTTGCATTTCG
AAGTTCGCCGGCAGGGTAAACCTGTCGACCCACTGAAGTATTTGCCGCCGCAATAA

Upstream 100 bases:

>100_bases
TGCTGACTCTGGTCGAGCGCCTCGGACCCGCGCAGTGGCGCGAGTCGCGGCTTGATCGCGTTTTCTTTGTACCCTTAAAA
TCCGGAGTGATTTGACACCG

Downstream 100 bases:

>100_bases
GCGATACGACCATGCCGAAATCGAAGCGCCCGCCACCGCAAGCCGAGTCTGAGACGATCAGCCACGCTATGTCCGCTTCG
GTGGATGAAAGCGGCGCTTC

Product: putative lipoprotein/metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSMLRAMQRTRLNAPMTVTQRSVCVLALSLLMTACASRLDQAPVVDRSGGGTLSTQATQPAVPLGPPPPGYYRVKPGDTL
YRIALENGQNYRDISAWNNLTNPNQIEVDQLLRVVPPGANTAALTPGVSTAPIGGGAMVQSAPLGSTPPSTGATAGVAAP
PLYGSAANNASSAPPASAGAASDSNAGASGNVTFAWPVRGPLLGTFNDSTNKGVNIGGAAGDPVKASADGRVVYAGNGLR
GYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Sequences:

>Translated_311_residues
MSMLRAMQRTRLNAPMTVTQRSVCVLALSLLMTACASRLDQAPVVDRSGGGTLSTQATQPAVPLGPPPPGYYRVKPGDTL
YRIALENGQNYRDISAWNNLTNPNQIEVDQLLRVVPPGANTAALTPGVSTAPIGGGAMVQSAPLGSTPPSTGATAGVAAP
PLYGSAANNASSAPPASAGAASDSNAGASGNVTFAWPVRGPLLGTFNDSTNKGVNIGGAAGDPVKASADGRVVYAGNGLR
GYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
>Mature_310_residues
SMLRAMQRTRLNAPMTVTQRSVCVLALSLLMTACASRLDQAPVVDRSGGGTLSTQATQPAVPLGPPPPGYYRVKPGDTLY
RIALENGQNYRDISAWNNLTNPNQIEVDQLLRVVPPGANTAALTPGVSTAPIGGGAMVQSAPLGSTPPSTGATAGVAAPP
LYGSAANNASSAPPASAGAASDSNAGASGNVTFAWPVRGPLLGTFNDSTNKGVNIGGAAGDPVKASADGRVVYAGNGLRG
YGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=276, Percent_Identity=36.5942028985507, Blast_Score=160, Evalue=7e-41,
Organism=Escherichia coli, GI87082174, Length=242, Percent_Identity=39.2561983471074, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=40.3361344537815, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32057; Mature: 31925

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMLRAMQRTRLNAPMTVTQRSVCVLALSLLMTACASRLDQAPVVDRSGGGTLSTQATQP
CHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCC
AVPLGPPPPGYYRVKPGDTLYRIALENGQNYRDISAWNNLTNPNQIEVDQLLRVVPPGAN
CCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEHHHHCCCCCCCEECHHHHHHHCCCCCC
TAALTPGVSTAPIGGGAMVQSAPLGSTPPSTGATAGVAAPPLYGSAANNASSAPPASAGA
CEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ASDSNAGASGNVTFAWPVRGPLLGTFNDSTNKGVNIGGAAGDPVKASADGRVVYAGNGLR
CCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCEEECCCCCCCCEECCCCEEEEECCCCC
GYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGK
CCCCEEEEEECCEEEEEEECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCCC
PVDPLKYLPPQ
CCCCCCCCCCC
>Mature Secondary Structure 
SMLRAMQRTRLNAPMTVTQRSVCVLALSLLMTACASRLDQAPVVDRSGGGTLSTQATQP
HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCC
AVPLGPPPPGYYRVKPGDTLYRIALENGQNYRDISAWNNLTNPNQIEVDQLLRVVPPGAN
CCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEHHHHCCCCCCCEECHHHHHHHCCCCCC
TAALTPGVSTAPIGGGAMVQSAPLGSTPPSTGATAGVAAPPLYGSAANNASSAPPASAGA
CEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ASDSNAGASGNVTFAWPVRGPLLGTFNDSTNKGVNIGGAAGDPVKASADGRVVYAGNGLR
CCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCEEECCCCCCCCEECCCCEEEEECCCCC
GYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGK
CCCCEEEEEECCEEEEEEECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCCC
PVDPLKYLPPQ
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]