| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
Click here to switch to the map view.
The map label for this gene is atoS [C]
Identifier: 91783178
GI number: 91783178
Start: 2026877
End: 2029246
Strand: Direct
Name: atoS [C]
Synonym: Bxe_A4534
Alternate gene names: 91783178
Gene position: 2026877-2029246 (Clockwise)
Preceding gene: 91783177
Following gene: 91783186
Centisome position: 41.4
GC content: 60.55
Gene sequence:
>2370_bases ATGCACGAATCTGGAATCATGCAGCGCGAGGCCTATGACGACTGGGCCAGTCAATGGGTTGCGTCGACTGAGGACTACTC GGTTTTCCTTATCACGTCCGAAGGGGACGTTGCCAGCTGGAACCCCGGCGGCACCCGGATCGAGGGTTACCAGCTGGAAG AAATCATCGGACGCAATTTTTCCACGCTTTACACCGATGAAGACCGCGGAAACGGGGTGCCGGATGCGGTACTGGAAAGC GTCCTGCAACGGGGGCGTCATGAGTCGGAGGGATGGCGCCGGCAAAAAGACGGCACTCATTTCTGGGCGAGCGTGGTTAC GACGGGGCTGCGCGATCCCCGCGGCGAGTTCCGTGGGGCGGTTCAGATAGTGCGAGATGTGGGTGAGAAGCGCAGGGCAC ATGAAGCCGCGATCGAAAGCGAGCGGCGCTTCCGGCTGCTGGTACAGGGGGTGACGGACTACGCCATCTTCATGCTCTCA CCCGAGGGCTATGTGACGAACTGGAACAGTGGTGCCCGCAGGATAAAGGGTTACAGCGAGCAGGAGATCATCGGCTCTCA TTTTTCCCGTTTCTATAAGCCCGAAGACGTCGCTGCCGGTAAACCGCAGCGTGGCCTGGAGACGGCGGCCCGTGAGGGGC GTTTTGAGGCGGAAGGCTGGCGGGTGCGCCGTGACGGGACGACCTTCTGGGCCCATGTGGTGATCCATGCGATTCGCGAC GACGAAGGAACCCTCATCGGTTTTGCGAAGGTGACGCGGGACGTTACCGAACGGCGCCAGGCGAGCGAAATGCTCGAACA GACGCGAGCGGCGCTGTTTCAGGCGCAGAAGATGGAAGCAATTGGCAAGCTGACAGGTGGCGTTGCCCACGATTTCAACA ACGTGCTGCAGGTCTTACGGGGCAACCTCGAACTGCTGGAGAACCGGCATCGCCGCGACAACTGGAGCGTGGAACGCCTC GCCCACGCAATCGATGCCGTCGAGCGTGGCGCCAAACTCGCATCCCAGCTTCTCGCGTTCGGTCGGCGGCAGGCGCTGCG GCCCGTTGTTGTGAACCTTGCGGCCATGGTGCGCGCGATGGATAGTATGCTGGCGCGAACGCTTGGAGAAACAGTCAGCG TGGAAACAGTTGTCGCTGCCGGTCTGTGGAACACGCTGGTCGATCCTCACCAGCTTGAAAATGTGCTGCTGAACCTGGCT ATCAATGCGCGCGACGCGATGCCCACCGGCGGACGCCTTACGCTTGAGCTTGCTAACGCGATGCTGGACGATCGTTATGT AGGCGCCCTGTCGGATGTGCCGGCGGGTCAGTACGTGATGCTGGCTGTGACGGACACAGGAGTGGGCATGCCACCGGATG TTGTCGAGCGGGCCTTTGACCCGTTTTTCACCACCAAGCCTGAGGGGCTGGGAACCGGGTTGGGCCTGAGCATGGCTTAT GGTCTCGTCAAGCAGAGCGGTGGACATATCCGGATCTACAGCGAACTCGGACACGGCACGACGGTAAGAATATATTTGCC GCGTTCAATGGCGAATGCTGTTGAGCTGCCGTCGAGACAAAGCAAGGGAGGGATAACGGGGGGCGGGGAGACCGTGCTGG TGGTGGAGGACGACGCGAAGGTTCAGTCGACGGTCGTCGAGATGCTGGCTGGTCTGGGTTATTCGGTGCTCAAGGCAGAC GACGCGGAGCAGGCGCTCGCGGTGATTCGCAGCGGGGTTCATATCGATCTGCTATTCACGGATGTCGTGATGCCTGGAGC ACTGCGTAGCCCCGAGATGGCCCGACAGGCCGTGCAGCTTTTGCCTCACCTCAAGGTGCTGTTCACTTCGGGCTACACGC AGAATGCAATCGTGCACGGAGGCCGCCTGGACGCGGGCGTCGAGCTTCTCAGCAAGCCGTATAGCCAGGAAGAACTGGCG CGCAAGCTGCGCCACGTCCTTGGGACGCCTGGCGACGAGATTTCGGGCACAGCAGACGGGCCGTCCGCAGCGCAGACCGG CGATGGCCCCGTGTCGCAAGTGGTCTTGCACGTGCTTGTGGTTGAGGACGATGTCGCGTCTCTGGATGCAGTTTGTGAAC TTCTCGAAATGCTGGGTCACCATACGGCGAAGGCCGCAAATGCGAAGCAGGCGATGGAGCAGATAGGCACTGAAAGCTTT GATGTACTGTTGACCGATCTGAACCTGCCCGATGTCTTCGGAATCGACCTGGCGCAACAGGCCGTCGCCGCTCATCCTGA CCTGCACGTGATATTTGCGTCGGGAGATAATTTACCGACTGACGTGCAGCTTGGTTTTACATGGAAGGGACTGCGCAAAC CCTACACAGTGGACCAGCTTGACGTGGCACTCCGAACAATCGGGCAGTGA
Upstream 100 bases:
>100_bases GCGCTGATAGAATCAACCGCTGTAGTGACGCCCATGGAGCGATGGGGAGCGGGAGCACCCAGCCTGAAAGAGATACGCAC CAACAGCCAGGGTAACGACG
Downstream 100 bases:
>100_bases TTCACTATCAGAATGGCTTTCGCCGCTCGGGGCGCATCCAACTTTTCTGACGGAGGCATTGGATTTGCTGGCTCAGCCGG CCGAGCTGACGGCTGGCGGC
Product: PAS/PAC sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MHESGIMQREAYDDWASQWVASTEDYSVFLITSEGDVASWNPGGTRIEGYQLEEIIGRNFSTLYTDEDRGNGVPDAVLES VLQRGRHESEGWRRQKDGTHFWASVVTTGLRDPRGEFRGAVQIVRDVGEKRRAHEAAIESERRFRLLVQGVTDYAIFMLS PEGYVTNWNSGARRIKGYSEQEIIGSHFSRFYKPEDVAAGKPQRGLETAAREGRFEAEGWRVRRDGTTFWAHVVIHAIRD DEGTLIGFAKVTRDVTERRQASEMLEQTRAALFQAQKMEAIGKLTGGVAHDFNNVLQVLRGNLELLENRHRRDNWSVERL AHAIDAVERGAKLASQLLAFGRRQALRPVVVNLAAMVRAMDSMLARTLGETVSVETVVAAGLWNTLVDPHQLENVLLNLA INARDAMPTGGRLTLELANAMLDDRYVGALSDVPAGQYVMLAVTDTGVGMPPDVVERAFDPFFTTKPEGLGTGLGLSMAY GLVKQSGGHIRIYSELGHGTTVRIYLPRSMANAVELPSRQSKGGITGGGETVLVVEDDAKVQSTVVEMLAGLGYSVLKAD DAEQALAVIRSGVHIDLLFTDVVMPGALRSPEMARQAVQLLPHLKVLFTSGYTQNAIVHGGRLDAGVELLSKPYSQEELA RKLRHVLGTPGDEISGTADGPSAAQTGDGPVSQVVLHVLVVEDDVASLDAVCELLEMLGHHTAKAANAKQAMEQIGTESF DVLLTDLNLPDVFGIDLAQQAVAAHPDLHVIFASGDNLPTDVQLGFTWKGLRKPYTVDQLDVALRTIGQ
Sequences:
>Translated_789_residues MHESGIMQREAYDDWASQWVASTEDYSVFLITSEGDVASWNPGGTRIEGYQLEEIIGRNFSTLYTDEDRGNGVPDAVLES VLQRGRHESEGWRRQKDGTHFWASVVTTGLRDPRGEFRGAVQIVRDVGEKRRAHEAAIESERRFRLLVQGVTDYAIFMLS PEGYVTNWNSGARRIKGYSEQEIIGSHFSRFYKPEDVAAGKPQRGLETAAREGRFEAEGWRVRRDGTTFWAHVVIHAIRD DEGTLIGFAKVTRDVTERRQASEMLEQTRAALFQAQKMEAIGKLTGGVAHDFNNVLQVLRGNLELLENRHRRDNWSVERL AHAIDAVERGAKLASQLLAFGRRQALRPVVVNLAAMVRAMDSMLARTLGETVSVETVVAAGLWNTLVDPHQLENVLLNLA INARDAMPTGGRLTLELANAMLDDRYVGALSDVPAGQYVMLAVTDTGVGMPPDVVERAFDPFFTTKPEGLGTGLGLSMAY GLVKQSGGHIRIYSELGHGTTVRIYLPRSMANAVELPSRQSKGGITGGGETVLVVEDDAKVQSTVVEMLAGLGYSVLKAD DAEQALAVIRSGVHIDLLFTDVVMPGALRSPEMARQAVQLLPHLKVLFTSGYTQNAIVHGGRLDAGVELLSKPYSQEELA RKLRHVLGTPGDEISGTADGPSAAQTGDGPVSQVVLHVLVVEDDVASLDAVCELLEMLGHHTAKAANAKQAMEQIGTESF DVLLTDLNLPDVFGIDLAQQAVAAHPDLHVIFASGDNLPTDVQLGFTWKGLRKPYTVDQLDVALRTIGQ >Mature_789_residues MHESGIMQREAYDDWASQWVASTEDYSVFLITSEGDVASWNPGGTRIEGYQLEEIIGRNFSTLYTDEDRGNGVPDAVLES VLQRGRHESEGWRRQKDGTHFWASVVTTGLRDPRGEFRGAVQIVRDVGEKRRAHEAAIESERRFRLLVQGVTDYAIFMLS PEGYVTNWNSGARRIKGYSEQEIIGSHFSRFYKPEDVAAGKPQRGLETAAREGRFEAEGWRVRRDGTTFWAHVVIHAIRD DEGTLIGFAKVTRDVTERRQASEMLEQTRAALFQAQKMEAIGKLTGGVAHDFNNVLQVLRGNLELLENRHRRDNWSVERL AHAIDAVERGAKLASQLLAFGRRQALRPVVVNLAAMVRAMDSMLARTLGETVSVETVVAAGLWNTLVDPHQLENVLLNLA INARDAMPTGGRLTLELANAMLDDRYVGALSDVPAGQYVMLAVTDTGVGMPPDVVERAFDPFFTTKPEGLGTGLGLSMAY GLVKQSGGHIRIYSELGHGTTVRIYLPRSMANAVELPSRQSKGGITGGGETVLVVEDDAKVQSTVVEMLAGLGYSVLKAD DAEQALAVIRSGVHIDLLFTDVVMPGALRSPEMARQAVQLLPHLKVLFTSGYTQNAIVHGGRLDAGVELLSKPYSQEELA RKLRHVLGTPGDEISGTADGPSAAQTGDGPVSQVVLHVLVVEDDVASLDAVCELLEMLGHHTAKAANAKQAMEQIGTESF DVLLTDLNLPDVFGIDLAQQAVAAHPDLHVIFASGDNLPTDVQLGFTWKGLRKPYTVDQLDVALRTIGQ
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=421, Percent_Identity=27.0783847980998, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1790436, Length=234, Percent_Identity=28.2051282051282, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI145693157, Length=311, Percent_Identity=26.0450160771704, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI87081816, Length=286, Percent_Identity=25.1748251748252, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1788713, Length=487, Percent_Identity=21.9712525667351, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI1790300, Length=257, Percent_Identity=30.3501945525292, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI48994928, Length=551, Percent_Identity=23.2304900181488, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 86204; Mature: 86204
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHESGIMQREAYDDWASQWVASTEDYSVFLITSEGDVASWNPGGTRIEGYQLEEIIGRNF CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEECCEEHHHHHCCCC STLYTDEDRGNGVPDAVLESVLQRGRHESEGWRRQKDGTHFWASVVTTGLRDPRGEFRGA CEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHH VQIVRDVGEKRRAHEAAIESERRFRLLVQGVTDYAIFMLSPEGYVTNWNSGARRIKGYSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHHCCCCH QEIIGSHFSRFYKPEDVAAGKPQRGLETAAREGRFEAEGWRVRRDGTTFWAHVVIHAIRD HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCC DEGTLIGFAKVTRDVTERRQASEMLEQTRAALFQAQKMEAIGKLTGGVAHDFNNVLQVLR CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH GNLELLENRHRRDNWSVERLAHAIDAVERGAKLASQLLAFGRRQALRPVVVNLAAMVRAM CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DSMLARTLGETVSVETVVAAGLWNTLVDPHQLENVLLNLAINARDAMPTGGRLTLELANA HHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHH MLDDRYVGALSDVPAGQYVMLAVTDTGVGMPPDVVERAFDPFFTTKPEGLGTGLGLSMAY HHCCHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH GLVKQSGGHIRIYSELGHGTTVRIYLPRSMANAVELPSRQSKGGITGGGETVLVVEDDAK HHHHCCCCEEEEEEECCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCH VQSTVVEMLAGLGYSVLKADDAEQALAVIRSGVHIDLLFTDVVMPGALRSPEMARQAVQL HHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCEEEEEEHHHHCCCCCCCHHHHHHHHHH LPHLKVLFTSGYTQNAIVHGGRLDAGVELLSKPYSQEELARKLRHVLGTPGDEISGTADG HHHHHHHHCCCCCCCCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC PSAAQTGDGPVSQVVLHVLVVEDDVASLDAVCELLEMLGHHTAKAANAKQAMEQIGTESF CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCE DVLLTDLNLPDVFGIDLAQQAVAAHPDLHVIFASGDNLPTDVQLGFTWKGLRKPYTVDQL EEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEECEEECCCCCCCCHHHH DVALRTIGQ HHHHHHHCC >Mature Secondary Structure MHESGIMQREAYDDWASQWVASTEDYSVFLITSEGDVASWNPGGTRIEGYQLEEIIGRNF CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEECCEEHHHHHCCCC STLYTDEDRGNGVPDAVLESVLQRGRHESEGWRRQKDGTHFWASVVTTGLRDPRGEFRGA CEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHH VQIVRDVGEKRRAHEAAIESERRFRLLVQGVTDYAIFMLSPEGYVTNWNSGARRIKGYSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHHCCCCH QEIIGSHFSRFYKPEDVAAGKPQRGLETAAREGRFEAEGWRVRRDGTTFWAHVVIHAIRD HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCC DEGTLIGFAKVTRDVTERRQASEMLEQTRAALFQAQKMEAIGKLTGGVAHDFNNVLQVLR CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH GNLELLENRHRRDNWSVERLAHAIDAVERGAKLASQLLAFGRRQALRPVVVNLAAMVRAM CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DSMLARTLGETVSVETVVAAGLWNTLVDPHQLENVLLNLAINARDAMPTGGRLTLELANA HHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHH MLDDRYVGALSDVPAGQYVMLAVTDTGVGMPPDVVERAFDPFFTTKPEGLGTGLGLSMAY HHCCHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH GLVKQSGGHIRIYSELGHGTTVRIYLPRSMANAVELPSRQSKGGITGGGETVLVVEDDAK HHHHCCCCEEEEEEECCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCH VQSTVVEMLAGLGYSVLKADDAEQALAVIRSGVHIDLLFTDVVMPGALRSPEMARQAVQL HHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCEEEEEEHHHHCCCCCCCHHHHHHHHHH LPHLKVLFTSGYTQNAIVHGGRLDAGVELLSKPYSQEELARKLRHVLGTPGDEISGTADG HHHHHHHHCCCCCCCCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC PSAAQTGDGPVSQVVLHVLVVEDDVASLDAVCELLEMLGHHTAKAANAKQAMEQIGTESF CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCE DVLLTDLNLPDVFGIDLAQQAVAAHPDLHVIFASGDNLPTDVQLGFTWKGLRKPYTVDQL EEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEECEEECCCCCCCCHHHH DVALRTIGQ HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA