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The map label for this gene is ykfC [H]

Identifier: 91783145

GI number: 91783145

Start: 1991477

End: 1992844

Strand: Direct

Name: ykfC [H]

Synonym: Bxe_A2660

Alternate gene names: 91783145

Gene position: 1991477-1992844 (Clockwise)

Preceding gene: 91783144

Following gene: 91783146

Centisome position: 40.68

GC content: 63.38

Gene sequence:

>1368_bases
ATGTCGATGCGGCAGGTATTGCGTCAGATGTCCGTGCAAACGGGGCGAGCGGGAGTAGCGCGCGGTGAAGCTGCGTGTGT
ACCTGTGAGCGACGAAGCCTGCGGCCCGCGGCATGAATCCGGGGACACAGGGTCAGCGCTGCTGGAAGCGGCGCTGACGA
GAGAGAACCTGAAGCAGGCGTTCAAACGGGTCCGGTCCAACAAGGGAGCTGCTGGCGTGGACGGTCTGGGTATTGACGAG
ACTGCGCGTCATCTGGTGACGGCGTGGCCCGCGATTCGTGAACAGTTGCTGAAGGGGACGTACCGGCCCAGTCCGGTACG
ACGGGTGACGATTCCGAAGCCGGATGGGGGCGAGCGCGAGCTGGGCATCCCGACGGTAACGGACCGGCTGATCCAGCAGG
CGTTGCTGCAAGTCTTGCAGCCGGTTCTGGACCCTACCTTCAGCGAGCACAGCTACGGTTTCCGGCCCGGACGGCGTGCG
CACGACGCGGTACTTGCCGCGCAGTCGTACGTGCAGTCGGGTCGGCGAATCGTGGTGGACGTTGATCTGGAGAAGTTCTT
CGACCGGGTCAATCACGACATCCTGATCGACCGTTTGCAGAAACGCATTGGTGACGCTGGCGTGATCCGGCTGATCCGGG
CGTATCTGAACAGCGGCATCATGGATGGCGGGGTGGTGCAGCAGCGGGATCAGGGCACGCCTCAAGGCGGGCCGCTATCC
CCACTGCTGGCCAACATGCTGCTCGATGAGGTGGACAAGGAACTGGAGCGGCGGGGTCATTGCTTCGCGCGCTACGCCGA
CGACGCGAACGTCTATGTTCGCAGTCGCCGTGCAGGCGAACGGGTGATGGCGCTGCTGCGACGCCTGTACGGGCGACTGC
GCCTGAAGGTCAATGAGACCAAAAGCGCAGTGGCCAGTGTGTTTGGTCGCAAGTTTCTGGGCTACAGCCTGTGGGTGGGT
GCGGGTGGGGTGGTCAAGCGCAAGGTGGCGGCCAAACCGCTGCTGGCGTTCAGGCACCGCATTCGTGAACTGACCCGTCG
CTCGGACGGGCGCAGCATGAAGGCAGTGGCGGAACAGTTACGGTCCTATGTGCAGGGTTGGAAAGCGTACTTCCGGTTGG
CGCAAACACCGAGGGTCTGGCGTGAGCTGGACGAGTGGATGCGCCACCGGTTGCGTGCCATGCAACTCAAACACTGGCGC
CGTGGCCCTACCATCTATCGGGAACTGCGTGCGTTGGGAGCTAAACCTGCCGTGGCACATCAGATAGCGGCCAACAGCCG
TCGCTGGTGGCGTAACAGCGCAAAGCTGCTCAACAGCGTGCTGACCCTCGCCTACTTCGACCGGCTGGGTGTCCCTCGAC
TCTCATGA

Upstream 100 bases:

>100_bases
GCCGGAGCGAGAAGTCAGCAGAGGCCGTAATAGTCACAGGGTAGGCCGATGAGGCTGAGGCTGGTGACGAAGGGCCAAAC
GGGAAGGAGTGTCCAGCGTC

Downstream 100 bases:

>100_bases
CCTCAACCTCCTGAACCGCCCGGTGCGGACCCGCATGCCGGGTGGTGTGGCAGGGGCGCAGTCATATGTGACTGCCCCCT
ATGCCGATTCTGGTGCTGAT

Product: putative reverse transcriptase-maturase- endonucleas

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSMRQVLRQMSVQTGRAGVARGEAACVPVSDEACGPRHESGDTGSALLEAALTRENLKQAFKRVRSNKGAAGVDGLGIDE
TARHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPVLDPTFSEHSYGFRPGRRA
HDAVLAAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDRLQKRIGDAGVIRLIRAYLNSGIMDGGVVQQRDQGTPQGGPLS
PLLANMLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNETKSAVASVFGRKFLGYSLWVG
AGGVVKRKVAAKPLLAFRHRIRELTRRSDGRSMKAVAEQLRSYVQGWKAYFRLAQTPRVWRELDEWMRHRLRAMQLKHWR
RGPTIYRELRALGAKPAVAHQIAANSRRWWRNSAKLLNSVLTLAYFDRLGVPRLS

Sequences:

>Translated_455_residues
MSMRQVLRQMSVQTGRAGVARGEAACVPVSDEACGPRHESGDTGSALLEAALTRENLKQAFKRVRSNKGAAGVDGLGIDE
TARHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPVLDPTFSEHSYGFRPGRRA
HDAVLAAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDRLQKRIGDAGVIRLIRAYLNSGIMDGGVVQQRDQGTPQGGPLS
PLLANMLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNETKSAVASVFGRKFLGYSLWVG
AGGVVKRKVAAKPLLAFRHRIRELTRRSDGRSMKAVAEQLRSYVQGWKAYFRLAQTPRVWRELDEWMRHRLRAMQLKHWR
RGPTIYRELRALGAKPAVAHQIAANSRRWWRNSAKLLNSVLTLAYFDRLGVPRLS
>Mature_454_residues
SMRQVLRQMSVQTGRAGVARGEAACVPVSDEACGPRHESGDTGSALLEAALTRENLKQAFKRVRSNKGAAGVDGLGIDET
ARHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPVLDPTFSEHSYGFRPGRRAH
DAVLAAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDRLQKRIGDAGVIRLIRAYLNSGIMDGGVVQQRDQGTPQGGPLSP
LLANMLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNETKSAVASVFGRKFLGYSLWVGA
GGVVKRKVAAKPLLAFRHRIRELTRRSDGRSMKAVAEQLRSYVQGWKAYFRLAQTPRVWRELDEWMRHRLRAMQLKHWRR
GPTIYRELRALGAKPAVAHQIAANSRRWWRNSAKLLNSVLTLAYFDRLGVPRLS

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=202, Percent_Identity=31.1881188118812, Blast_Score=124, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6226520, Length=201, Percent_Identity=30.8457711442786, Blast_Score=113, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 51312; Mature: 51181

Theoretical pI: Translated: 11.45; Mature: 11.45

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMRQVLRQMSVQTGRAGVARGEAACVPVSDEACGPRHESGDTGSALLEAALTRENLKQA
CCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FKRVRSNKGAAGVDGLGIDETARHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERE
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC
LGIPTVTDRLIQQALLQVLQPVLDPTFSEHSYGFRPGRRAHDAVLAAQSYVQSGRRIVVD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
VDLEKFFDRVNHDILIDRLQKRIGDAGVIRLIRAYLNSGIMDGGVVQQRDQGTPQGGPLS
ECHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
PLLANMLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNET
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHEEEECHH
KSAVASVFGRKFLGYSLWVGAGGVVKRKVAAKPLLAFRHRIRELTRRSDGRSMKAVAEQL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RSYVQGWKAYFRLAQTPRVWRELDEWMRHRLRAMQLKHWRRGPTIYRELRALGAKPAVAH
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHH
QIAANSRRWWRNSAKLLNSVLTLAYFDRLGVPRLS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SMRQVLRQMSVQTGRAGVARGEAACVPVSDEACGPRHESGDTGSALLEAALTRENLKQA
CHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FKRVRSNKGAAGVDGLGIDETARHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERE
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC
LGIPTVTDRLIQQALLQVLQPVLDPTFSEHSYGFRPGRRAHDAVLAAQSYVQSGRRIVVD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
VDLEKFFDRVNHDILIDRLQKRIGDAGVIRLIRAYLNSGIMDGGVVQQRDQGTPQGGPLS
ECHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
PLLANMLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGRLRLKVNET
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHEEEECHH
KSAVASVFGRKFLGYSLWVGAGGVVKRKVAAKPLLAFRHRIRELTRRSDGRSMKAVAEQL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RSYVQGWKAYFRLAQTPRVWRELDEWMRHRLRAMQLKHWRRGPTIYRELRALGAKPAVAH
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHH
QIAANSRRWWRNSAKLLNSVLTLAYFDRLGVPRLS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]