| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is idnO [C]
Identifier: 91783110
GI number: 91783110
Start: 1960766
End: 1961539
Strand: Direct
Name: idnO [C]
Synonym: Bxe_A2697
Alternate gene names: 91783110
Gene position: 1960766-1961539 (Clockwise)
Preceding gene: 91783109
Following gene: 91783111
Centisome position: 40.05
GC content: 62.79
Gene sequence:
>774_bases ATGTCACGGATCTTCATTACTGGTTCGACCGATGGCCTGGGATTCATGGCCGCCGAATTACTTCTTTCCCAGGGACACGA AGTCGTGCTGCACGCGCGCAGTCCGCGGCGTGCCGACAACGTGCGCCAGCGTCTTCCCGGCGCTGCCGCGATTGTGACCG GCGACCTCTCGCGCATAGCGGAAATGAAATCGGCTGCGGAGCAGGTCAACCGGCTCGGAACGTTCGACGCAGTCATTCAT AACGTGGGTATCGGCTACCGCGAGCCGAAAAGAATCGAGACGGAAGACGGACTGCCACATGTCTTTGCCGTCAACGTGAT GGCGCCGTACGTGCTGACGGCTCTGATCGAGCGACCACGTCGTCTCGTGTACCTCAGTTCCGGCATGCACCATGGGGTTA CCGCGAACCTCGGGGACACACGCTGGAAGCAGCGCCGCTGGAATGGCTCCGAGGCCTACGCCGAGAGCAAGCTGTACGAC GTTCTGCTCGCCTTTGCCATTGCCCGCCGCTGGCCCGACGTCATGTCCAATGCGCTGGAGCCCGGCTGGGTGCCGACGCG CATGGGCGGCCCTTCGGCACCGGACGATCTCGATCAGGCACATCGCACGCAGGTCTGGCTGGCCGCCAGTGATGATCCGG GTGCGATGGTCTCGGGCGAGTATTTTTACCACCTGCAGCGGCGTGCGCCGAATCCCGCAACGCGAGATCACAGCACGCAG GACAGGCTGATTGATCTGTGCGAGTCGTTCTCCGGTATCCGGCTGCCCGATTGA
Upstream 100 bases:
>100_bases ACGCCGCGTGGGTCGGGATCGCAGGCATGCTGGCCGGCGGCCTCGCACTGGTCCTCGCGAAGTCATTGAGGTCTTCGTAA TCGTACTGCCGGATATTGCT
Downstream 100 bases:
>100_bases GCACGCGGCCAAAGATGCGTCCCGACTGTTTCACAAATGGAAACCCTATGAACATCAAAGGTTGTACGGCACTCGTCACA GGTGCCAATCGAGGCTTGGG
Product: putative daunorubicin C-13 ketoreductase
Products: D-Gluconate; Nicotinamide adenine dinucleotide phosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MSRIFITGSTDGLGFMAAELLLSQGHEVVLHARSPRRADNVRQRLPGAAAIVTGDLSRIAEMKSAAEQVNRLGTFDAVIH NVGIGYREPKRIETEDGLPHVFAVNVMAPYVLTALIERPRRLVYLSSGMHHGVTANLGDTRWKQRRWNGSEAYAESKLYD VLLAFAIARRWPDVMSNALEPGWVPTRMGGPSAPDDLDQAHRTQVWLAASDDPGAMVSGEYFYHLQRRAPNPATRDHSTQ DRLIDLCESFSGIRLPD
Sequences:
>Translated_257_residues MSRIFITGSTDGLGFMAAELLLSQGHEVVLHARSPRRADNVRQRLPGAAAIVTGDLSRIAEMKSAAEQVNRLGTFDAVIH NVGIGYREPKRIETEDGLPHVFAVNVMAPYVLTALIERPRRLVYLSSGMHHGVTANLGDTRWKQRRWNGSEAYAESKLYD VLLAFAIARRWPDVMSNALEPGWVPTRMGGPSAPDDLDQAHRTQVWLAASDDPGAMVSGEYFYHLQRRAPNPATRDHSTQ DRLIDLCESFSGIRLPD >Mature_256_residues SRIFITGSTDGLGFMAAELLLSQGHEVVLHARSPRRADNVRQRLPGAAAIVTGDLSRIAEMKSAAEQVNRLGTFDAVIHN VGIGYREPKRIETEDGLPHVFAVNVMAPYVLTALIERPRRLVYLSSGMHHGVTANLGDTRWKQRRWNGSEAYAESKLYDV LLAFAIARRWPDVMSNALEPGWVPTRMGGPSAPDDLDQAHRTQVWLAASDDPGAMVSGEYFYHLQRRAPNPATRDHSTQD RLIDLCESFSGIRLPD
Specific function: Catalyzes A Reversible Reduction Of 5-Ketoglutanate To Form D-Gluconate. Dependent On Nadp, Almost Inactive With NAD. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI225579078, Length=289, Percent_Identity=27.681660899654, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI10190746, Length=293, Percent_Identity=28.3276450511945, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI19923931, Length=232, Percent_Identity=29.3103448275862, Blast_Score=66, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17535059, Length=178, Percent_Identity=30.8988764044944, Blast_Score=70, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.69 [C]
Molecular weight: Translated: 28526; Mature: 28394
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIFITGSTDGLGFMAAELLLSQGHEVVLHARSPRRADNVRQRLPGAAAIVTGDLSRIA CCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEHHHHHHHH EMKSAAEQVNRLGTFDAVIHNVGIGYREPKRIETEDGLPHVFAVNVMAPYVLTALIERPR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCC RLVYLSSGMHHGVTANLGDTRWKQRRWNGSEAYAESKLYDVLLAFAIARRWPDVMSNALE EEEEEECCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC PGWVPTRMGGPSAPDDLDQAHRTQVWLAASDDPGAMVSGEYFYHLQRRAPNPATRDHSTQ CCCCCCCCCCCCCCHHHHHHHHCEEEEEECCCCCCEECCHHHHHHHHCCCCCCCCCCCHH DRLIDLCESFSGIRLPD HHHHHHHHHCCCCCCCC >Mature Secondary Structure SRIFITGSTDGLGFMAAELLLSQGHEVVLHARSPRRADNVRQRLPGAAAIVTGDLSRIA CEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEHHHHHHHH EMKSAAEQVNRLGTFDAVIHNVGIGYREPKRIETEDGLPHVFAVNVMAPYVLTALIERPR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCC RLVYLSSGMHHGVTANLGDTRWKQRRWNGSEAYAESKLYDVLLAFAIARRWPDVMSNALE EEEEEECCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC PGWVPTRMGGPSAPDDLDQAHRTQVWLAASDDPGAMVSGEYFYHLQRRAPNPATRDHSTQ CCCCCCCCCCCCCCHHHHHHHHCEEEEEECCCCCCEECCHHHHHHHHCCCCCCCCCCCHH DRLIDLCESFSGIRLPD HHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+; NADH; NADP+; NADPH [C]
Metal ions: Mn2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.006 {NADPH}} 0.9 {5-keto-D-gluconate}} 0.02 {NADP+}} 20 {D-gluconate}} [C]
Substrates: 5-Dehydro-D-gluconate; H+; Nicotinamide adenine dinucleotide phosphate - reduced [C]
Specific reaction: 5-Dehydro-D-gluconate + H+ + Nicotinamide adenine dinucleotide phosphate - reduced <==> D-Gluconate + Nicotinamide adenine dinucleotide phosphate [C]
General reaction: Redox reaction [C]
Inhibitor: Cd2+; Cs2+; Cu2+; Divalent metal ions; Hg2+; Ni2+; p-Chloromercuribenzoate; Sn2+; Sulfhydryl reagents [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8383668 [H]