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The map label for this gene is rpoE [H]

Identifier: 91783025

GI number: 91783025

Start: 1865260

End: 1865790

Strand: Direct

Name: rpoE [H]

Synonym: Bxe_A2784

Alternate gene names: 91783025

Gene position: 1865260-1865790 (Clockwise)

Preceding gene: 91783024

Following gene: 91783026

Centisome position: 38.1

GC content: 66.1

Gene sequence:

>531_bases
GTGAATTTCGAAGCTGAAGTGATTTCGTGGCTCCCGCAGTTGCGCCGCTACGCGCGCGCACTGACGGGCGACCGCGCCTG
GGCCGACGACCTCGTGCAGGATACGGCGGAGCGGGCGTTCGCGCGCTGGGCGGCGTTCCGGCCGGACAGCAATCTGCGCG
CATGGCTGCTGACGATCCTGCGGCATCTCTATATCGACCAGTTGCGCGGCCGCCGCGAGATTGCCGTCGACGACGAAAGC
GCGCCGTGGCGCAACCTCGAAGCGCCTCAGGGCGAAGTGGACGGCCTCGTGCTGCGCGATCTGCAGCGCGCGCTGTATTG
TCTGCCGGTCGAACAGCGCGAAGTGCTGTTGCTGGTCTGCGTGGAGGAATTGTCTTATCAGGAAGCGTCGAGCGCGCTCG
GCGTGCCGATCGGCACGGTCATGTCGCGGCTGTCGCGCGCGCGAGAACACATGCGCGCGTTGCTGACGGAGGGACCGGCC
GAGGGGCCGGCGCGTAAAACTACGCCGTTAAAAGTAGTGAGAAATCCGTGA

Upstream 100 bases:

>100_bases
CCGGTACGCTTGCGACGAGTGCCTGCACGACCGATGGCGGCGCCTCCGGCACGAGCGGCGGCAACAGCAGTGGCGGCGGC
TACTGAACGCCACACGCCGG

Downstream 100 bases:

>100_bases
TGAATAGCGACGACTACGATTCCAGCTTGCCCGAAGGGCTCGATCTGCGAGCGCTGTCGGCGTTTGTCGACGGCGAATTG
CCGGGCGCGGAGCGCGCCGC

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MNFEAEVISWLPQLRRYARALTGDRAWADDLVQDTAERAFARWAAFRPDSNLRAWLLTILRHLYIDQLRGRREIAVDDES
APWRNLEAPQGEVDGLVLRDLQRALYCLPVEQREVLLLVCVEELSYQEASSALGVPIGTVMSRLSRAREHMRALLTEGPA
EGPARKTTPLKVVRNP

Sequences:

>Translated_176_residues
MNFEAEVISWLPQLRRYARALTGDRAWADDLVQDTAERAFARWAAFRPDSNLRAWLLTILRHLYIDQLRGRREIAVDDES
APWRNLEAPQGEVDGLVLRDLQRALYCLPVEQREVLLLVCVEELSYQEASSALGVPIGTVMSRLSRAREHMRALLTEGPA
EGPARKTTPLKVVRNP
>Mature_176_residues
MNFEAEVISWLPQLRRYARALTGDRAWADDLVQDTAERAFARWAAFRPDSNLRAWLLTILRHLYIDQLRGRREIAVDDES
APWRNLEAPQGEVDGLVLRDLQRALYCLPVEQREVLLLVCVEELSYQEASSALGVPIGTVMSRLSRAREHMRALLTEGPA
EGPARKTTPLKVVRNP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20059; Mature: 20059

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFEAEVISWLPQLRRYARALTGDRAWADDLVQDTAERAFARWAAFRPDSNLRAWLLTIL
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RHLYIDQLRGRREIAVDDESAPWRNLEAPQGEVDGLVLRDLQRALYCLPVEQREVLLLVC
HHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VEELSYQEASSALGVPIGTVMSRLSRAREHMRALLTEGPAEGPARKTTPLKVVRNP
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MNFEAEVISWLPQLRRYARALTGDRAWADDLVQDTAERAFARWAAFRPDSNLRAWLLTIL
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RHLYIDQLRGRREIAVDDESAPWRNLEAPQGEVDGLVLRDLQRALYCLPVEQREVLLLVC
HHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VEELSYQEASSALGVPIGTVMSRLSRAREHMRALLTEGPAEGPARKTTPLKVVRNP
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]