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The map label for this gene is recD [H]

Identifier: 91782972

GI number: 91782972

Start: 1803918

End: 1806032

Strand: Direct

Name: recD [H]

Synonym: Bxe_A2837

Alternate gene names: 91782972

Gene position: 1803918-1806032 (Clockwise)

Preceding gene: 91782971

Following gene: 91782974

Centisome position: 36.85

GC content: 69.31

Gene sequence:

>2115_bases
ATGAGCACGTTCGAACAGAGCGCATCCGCGCCGCCCGAGCTCGACGATATCGGCGTGAATTTGCCAGCGCCGGCCGATTT
CAGCACCGCGCTCGCGGAAGGTTTCGCGCGTCGCATCGGCACGCTGGCGCGGCGCGGCGGTGCATCGGCGGAGGCGGTCA
AGTGGGCGGCGCGGGGCGCGTTCGCCGCGAGCCGCGCAACGGCCGAGGGCCATGTGTGCGTGCCGCTCGCGTTGCTGGCG
CGGCGCTTCGAGGCATCGGGCGCCGAAGTGCGCGCGGCGCTGTTCGCAAGCGGCATGGCGAGCGACGGCTCGCAAAGCGC
GGCAGCGTTGCGGCCGCTGGTGGTGGATGGGCAAGGGCGGTTGTATCTGGCTCGCTATTACGACTACGAGCGGCGGCTTG
CGCGCGCGCTGGTCGCGCATGCTGGAGCGGGGGTCGGTACTCGCGCCGCTCCCGGTGCTGAAGCAGGCGGCAACGCGCAG
ACTTTGCACGAGCGCCTGCTGCGCTACTTCGGCACGCCGAAAGACAATGAAGTGGACTGGCAACGTGTCGCGGCGGTCAT
GGCGCTGTCGGGACAACTTACTATCGTCAGCGGCGGACCCGGTACCGGCAAGACCACCACCGTGGTCGGCGTGCTTGCCT
GCCTGCTCGATGCGCGCGCGGATCTGCGAATCGCACTGGGGGCGCCCACGGGCAAAGCGGCACAACGCATGCAGGAGGCC
TTGCTCGCGCGTGCCGGCGATCTGCCGCCCGAACTCGCCGCGCGTTTGCCGCAGACGTCGTACACGTTGCATCGTCTGCT
CGGTTCCGGACCGGGCGGGCGCTTCCGGCATCATCGGGACAATCCGCTGCCTTACGATGTCGTGGTGATCGACGAGGCGT
CGATGATCGACGTCGCGATGGCCGCGCATCTGCTCGACGCCCTTGCACCGCAGACGCGTCTCGTGATGCTGGGCGACAAG
GACCAGCTGGCCGCGGTCGAAGCCGGCGCGGTGTTCGCCGAACTCAGCGCGCGTCCGGCGTTCACGCAAGAGGGTGTGCG
GCGGCTCGCGGAGGCGCTCGGTATCGACGAAACACGGCTGACGCAGGCGTTGCCGCACGCGTCGCGCAGCCTGGGCGAAG
AGCAGGCCGGTTCTTTCCCGCAGTCCAATGCGCCGCACGGTTTCGAAGCGCGGCCCGACGATCTGTTCGCCTATGCCGAC
TCGCCGGAGGTTTTTAATGAACCGCTCGCGGGTGAGCTTTCTGAAGGCGCCGCGTCATCGCCCGGTCCGGCACCGCACGC
GCTGAACCCGCTCGCCGACTGCGTCGTCTGGCTCGAACGTAACTATCGGTTCGGTCTCGAATCGCCGATCGGCCGGCTGT
CACTCGCGATCCGCAACGGCTCGTCGAGCGCGGCGCTCGACGTCCTGCGCATCGATCCCGCGGAATCTTGCGCAGCGGCG
CTTTACGAAGACACCCATGCAACGCTTGCCGAGCGCACCGTCGCGCGTCTTGCCGCAGGCTTCGCGCCCTACGCCGACGC
GCTGGCCGCGGCGCTCGCAGCCGACACGCCCGACCCGTTGCCGCTTTTCGACGCGTTGAACCGTTTCCGCATTCTGTGCG
CGACCCGTTCGGGGCCGCGCGGCGTCGATCAGGTGAATGCGGCGATGGCGGCGCAGGTGCGGCGCTCGGCCGGTGTGACG
CTGGCAGTGGGCGCGCAGTGGTTCGCCGGGCGTCCCGTGATGGTGACGCGCAACGACTATGCACTGGGTCTCTTCAACGG
CGACATCGGCATTGCGCTGCCGGGCGCGAGCGGCGCGTTGCGCGTGCATTTCCGTACCGGCGACGGCGGCTTGCGGGCGG
TATCGCCGGCGGCGCTTCCGCCGCACGACACCGCATTTGCGCTCACGGTTCACAAGTCGCAGGGCTCGGAGTTCGAGCAC
GCGGTGCTAATGCTGCCGTCGGCGTTCAGCCGGGTGTTGTCGCGCGAGCTGGTGTACACGGCGATCACTCGCGCGCGCGA
GCGGGTGGAAGTGGTCGGCGCTCGCGCCGTGCTGGCGCAGGCCATTGCCACGCCGACCCAGCGCGATTCGGGATTGGCCG
CGCGAATAGCGGAGGCGTGGCACGGCGCTGAATAG

Upstream 100 bases:

>100_bases
CGCATTGGCACGACGCCGAAGGACCGGCGGGCGTGCACAGGCGGCGGCCGGCATTCGAGCTGGTCGCGCTGCTCGATGCG
GCCATGATCGGAGGTGTCGC

Downstream 100 bases:

>100_bases
CACGATGTGGGAGCCAGGCGCGTTGCCGGCAGGCCTGCTAGCTAAATGAGCAGCATGGCAGAACGCCGCACGGCGCGCGG
GCCTCGTTCAACCCGCCACC

Product: exodeoxyribonuclease V, alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 704; Mature: 703

Protein sequence:

>704_residues
MSTFEQSASAPPELDDIGVNLPAPADFSTALAEGFARRIGTLARRGGASAEAVKWAARGAFAASRATAEGHVCVPLALLA
RRFEASGAEVRAALFASGMASDGSQSAAALRPLVVDGQGRLYLARYYDYERRLARALVAHAGAGVGTRAAPGAEAGGNAQ
TLHERLLRYFGTPKDNEVDWQRVAAVMALSGQLTIVSGGPGTGKTTTVVGVLACLLDARADLRIALGAPTGKAAQRMQEA
LLARAGDLPPELAARLPQTSYTLHRLLGSGPGGRFRHHRDNPLPYDVVVIDEASMIDVAMAAHLLDALAPQTRLVMLGDK
DQLAAVEAGAVFAELSARPAFTQEGVRRLAEALGIDETRLTQALPHASRSLGEEQAGSFPQSNAPHGFEARPDDLFAYAD
SPEVFNEPLAGELSEGAASSPGPAPHALNPLADCVVWLERNYRFGLESPIGRLSLAIRNGSSSAALDVLRIDPAESCAAA
LYEDTHATLAERTVARLAAGFAPYADALAAALAADTPDPLPLFDALNRFRILCATRSGPRGVDQVNAAMAAQVRRSAGVT
LAVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGASGALRVHFRTGDGGLRAVSPAALPPHDTAFALTVHKSQGSEFEH
AVLMLPSAFSRVLSRELVYTAITRARERVEVVGARAVLAQAIATPTQRDSGLAARIAEAWHGAE

Sequences:

>Translated_704_residues
MSTFEQSASAPPELDDIGVNLPAPADFSTALAEGFARRIGTLARRGGASAEAVKWAARGAFAASRATAEGHVCVPLALLA
RRFEASGAEVRAALFASGMASDGSQSAAALRPLVVDGQGRLYLARYYDYERRLARALVAHAGAGVGTRAAPGAEAGGNAQ
TLHERLLRYFGTPKDNEVDWQRVAAVMALSGQLTIVSGGPGTGKTTTVVGVLACLLDARADLRIALGAPTGKAAQRMQEA
LLARAGDLPPELAARLPQTSYTLHRLLGSGPGGRFRHHRDNPLPYDVVVIDEASMIDVAMAAHLLDALAPQTRLVMLGDK
DQLAAVEAGAVFAELSARPAFTQEGVRRLAEALGIDETRLTQALPHASRSLGEEQAGSFPQSNAPHGFEARPDDLFAYAD
SPEVFNEPLAGELSEGAASSPGPAPHALNPLADCVVWLERNYRFGLESPIGRLSLAIRNGSSSAALDVLRIDPAESCAAA
LYEDTHATLAERTVARLAAGFAPYADALAAALAADTPDPLPLFDALNRFRILCATRSGPRGVDQVNAAMAAQVRRSAGVT
LAVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGASGALRVHFRTGDGGLRAVSPAALPPHDTAFALTVHKSQGSEFEH
AVLMLPSAFSRVLSRELVYTAITRARERVEVVGARAVLAQAIATPTQRDSGLAARIAEAWHGAE
>Mature_703_residues
STFEQSASAPPELDDIGVNLPAPADFSTALAEGFARRIGTLARRGGASAEAVKWAARGAFAASRATAEGHVCVPLALLAR
RFEASGAEVRAALFASGMASDGSQSAAALRPLVVDGQGRLYLARYYDYERRLARALVAHAGAGVGTRAAPGAEAGGNAQT
LHERLLRYFGTPKDNEVDWQRVAAVMALSGQLTIVSGGPGTGKTTTVVGVLACLLDARADLRIALGAPTGKAAQRMQEAL
LARAGDLPPELAARLPQTSYTLHRLLGSGPGGRFRHHRDNPLPYDVVVIDEASMIDVAMAAHLLDALAPQTRLVMLGDKD
QLAAVEAGAVFAELSARPAFTQEGVRRLAEALGIDETRLTQALPHASRSLGEEQAGSFPQSNAPHGFEARPDDLFAYADS
PEVFNEPLAGELSEGAASSPGPAPHALNPLADCVVWLERNYRFGLESPIGRLSLAIRNGSSSAALDVLRIDPAESCAAAL
YEDTHATLAERTVARLAAGFAPYADALAAALAADTPDPLPLFDALNRFRILCATRSGPRGVDQVNAAMAAQVRRSAGVTL
AVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGASGALRVHFRTGDGGLRAVSPAALPPHDTAFALTVHKSQGSEFEHA
VLMLPSAFSRVLSRELVYTAITRARERVEVVGARAVLAQAIATPTQRDSGLAARIAEAWHGAE

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=343, Percent_Identity=40.2332361516035, Blast_Score=203, Evalue=3e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 73702; Mature: 73571

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFEQSASAPPELDDIGVNLPAPADFSTALAEGFARRIGTLARRGGASAEAVKWAARGA
CCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
FAASRATAEGHVCVPLALLARRFEASGAEVRAALFASGMASDGSQSAAALRPLVVDGQGR
HHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHCCEEECCCCC
LYLARYYDYERRLARALVAHAGAGVGTRAAPGAEAGGNAQTLHERLLRYFGTPKDNEVDW
EEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH
QRVAAVMALSGQLTIVSGGPGTGKTTTVVGVLACLLDARADLRIALGAPTGKAAQRMQEA
HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
LLARAGDLPPELAARLPQTSYTLHRLLGSGPGGRFRHHRDNPLPYDVVVIDEASMIDVAM
HHHHCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH
AAHLLDALAPQTRLVMLGDKDQLAAVEAGAVFAELSARPAFTQEGVRRLAEALGIDETRL
HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
TQALPHASRSLGEEQAGSFPQSNAPHGFEARPDDLFAYADSPEVFNEPLAGELSEGAASS
HHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCC
PGPAPHALNPLADCVVWLERNYRFGLESPIGRLSLAIRNGSSSAALDVLRIDPAESCAAA
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHHHH
LYEDTHATLAERTVARLAAGFAPYADALAAALAADTPDPLPLFDALNRFRILCATRSGPR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEEECCCCCC
GVDQVNAAMAAQVRRSAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGASGAL
CHHHHHHHHHHHHHHHCCCEEEECCHHHCCCCEEEECCCEEEEEEECCEEEEECCCCCEE
RVHFRTGDGGLRAVSPAALPPHDTAFALTVHKSQGSEFEHAVLMLPSAFSRVLSRELVYT
EEEEECCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCHHEEECCHHHHHHHHHHHHHH
AITRARERVEVVGARAVLAQAIATPTQRDSGLAARIAEAWHGAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
STFEQSASAPPELDDIGVNLPAPADFSTALAEGFARRIGTLARRGGASAEAVKWAARGA
CCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
FAASRATAEGHVCVPLALLARRFEASGAEVRAALFASGMASDGSQSAAALRPLVVDGQGR
HHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHCCEEECCCCC
LYLARYYDYERRLARALVAHAGAGVGTRAAPGAEAGGNAQTLHERLLRYFGTPKDNEVDW
EEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH
QRVAAVMALSGQLTIVSGGPGTGKTTTVVGVLACLLDARADLRIALGAPTGKAAQRMQEA
HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
LLARAGDLPPELAARLPQTSYTLHRLLGSGPGGRFRHHRDNPLPYDVVVIDEASMIDVAM
HHHHCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH
AAHLLDALAPQTRLVMLGDKDQLAAVEAGAVFAELSARPAFTQEGVRRLAEALGIDETRL
HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
TQALPHASRSLGEEQAGSFPQSNAPHGFEARPDDLFAYADSPEVFNEPLAGELSEGAASS
HHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCC
PGPAPHALNPLADCVVWLERNYRFGLESPIGRLSLAIRNGSSSAALDVLRIDPAESCAAA
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHHHH
LYEDTHATLAERTVARLAAGFAPYADALAAALAADTPDPLPLFDALNRFRILCATRSGPR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEEECCCCCC
GVDQVNAAMAAQVRRSAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGASGAL
CHHHHHHHHHHHHHHHCCCEEEECCHHHCCCCEEEECCCEEEEEEECCEEEEECCCCCEE
RVHFRTGDGGLRAVSPAALPPHDTAFALTVHKSQGSEFEHAVLMLPSAFSRVLSRELVYT
EEEEECCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCHHEEECCHHHHHHHHHHHHHH
AITRARERVEVVGARAVLAQAIATPTQRDSGLAARIAEAWHGAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]