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The map label for this gene is rhaR [H]

Identifier: 91782937

GI number: 91782937

Start: 1746694

End: 1747617

Strand: Direct

Name: rhaR [H]

Synonym: Bxe_A2883

Alternate gene names: 91782937

Gene position: 1746694-1747617 (Clockwise)

Preceding gene: 91782935

Following gene: 91782938

Centisome position: 35.68

GC content: 61.9

Gene sequence:

>924_bases
GTGCGCCTTGCGACTTCGAGCGTCACGACGCAGTCCTATGCGCGGGAGTTCGCCAGACTGTTCAACGTGGACACAGCCCA
CACGCTCACCACGACCAGTCTGAAGACAGCACAACTAACGGCCACTCATATGTGTTCGTCGGTTCACGGGCTAGGGAAGA
GCACGCCCCTGCCGACGGAGGACGCATATATCCTCTCGTTGCAATTGCAACACTCGGGCGGAGCGGAGCTGTGGAAGCGA
GGTCGACGGGTCCCGACCGAGCCCTATGCCCCAGGTTCGATCATGTTGGGCCATCTTTCCGATGAACCGGTAGCGAACCT
GCCCGACCCCTTTGAGTGCATTCTGTTCCATATTCCTCGGCCCGCCTTTGACGAGCTCTGCGGGCTGTCCGCTTTGCCGC
CGGTTGGGGAGCTGGATGATGTCAACCGGACAATTGACCCCGTTTTGCATCATCTCGGCCTGGCTCTCGTCCCTGCGATG
GCGGACCCGCAGCTCGCCGGAAGTCTTTTCTTTGACCATGTTGCGCATGCCATGTACGAACGCCTCGCTACTACGTACGG
ACGCTTTCGGGGTACGTTGCCGCCGCGCGGCCGGGTGCTCTCCAAGACGCAGGAGCGCATAGCCAAGGAATTGCTCGTAG
CGGACCTGCTGGTCGAGCCGCCTCTCAGCGACATTGCCCTCGCGTGCGGGCTGTCGGTACGGCAGTTCGTTGACGCATTT
CGCAGCACGACGGGAATGCCCCCATTCCGATGGTTGCGCGCCTATCGGATAGAGCGCGCGAAGGAGTTGCTTCGTCGCAC
TTCGTTCTCGCTGGCAGAAATCGGCGCCGCTTGCGGGTTTGCCGACCAGAGCCACTTCACCAGAACGTTCTCGGCGGCAA
CCGGGACTACGCCGGGTGACTGGCGCCGTGCATGTGGTGCCTAG

Upstream 100 bases:

>100_bases
GCAGCGCGGAACGACTGCTCCTCCGCAAACCGGTTCAGAGCAGACGGGTTCGGTAGCCGGAGCCGGCAATGCGCGGGCGT
CACTCGGCGTTGATGGCGCC

Downstream 100 bases:

>100_bases
CGTCGGCAATCGCAGCCGGCTGCGGGGCAGGTTCCCGAAGAACCCAGTGGACCAGGCCCATCAGCCCGCATTGTTCAAAG
GAGACCGAAAAGACTATTCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MRLATSSVTTQSYAREFARLFNVDTAHTLTTTSLKTAQLTATHMCSSVHGLGKSTPLPTEDAYILSLQLQHSGGAELWKR
GRRVPTEPYAPGSIMLGHLSDEPVANLPDPFECILFHIPRPAFDELCGLSALPPVGELDDVNRTIDPVLHHLGLALVPAM
ADPQLAGSLFFDHVAHAMYERLATTYGRFRGTLPPRGRVLSKTQERIAKELLVADLLVEPPLSDIALACGLSVRQFVDAF
RSTTGMPPFRWLRAYRIERAKELLRRTSFSLAEIGAACGFADQSHFTRTFSAATGTTPGDWRRACGA

Sequences:

>Translated_307_residues
MRLATSSVTTQSYAREFARLFNVDTAHTLTTTSLKTAQLTATHMCSSVHGLGKSTPLPTEDAYILSLQLQHSGGAELWKR
GRRVPTEPYAPGSIMLGHLSDEPVANLPDPFECILFHIPRPAFDELCGLSALPPVGELDDVNRTIDPVLHHLGLALVPAM
ADPQLAGSLFFDHVAHAMYERLATTYGRFRGTLPPRGRVLSKTQERIAKELLVADLLVEPPLSDIALACGLSVRQFVDAF
RSTTGMPPFRWLRAYRIERAKELLRRTSFSLAEIGAACGFADQSHFTRTFSAATGTTPGDWRRACGA
>Mature_307_residues
MRLATSSVTTQSYAREFARLFNVDTAHTLTTTSLKTAQLTATHMCSSVHGLGKSTPLPTEDAYILSLQLQHSGGAELWKR
GRRVPTEPYAPGSIMLGHLSDEPVANLPDPFECILFHIPRPAFDELCGLSALPPVGELDDVNRTIDPVLHHLGLALVPAM
ADPQLAGSLFFDHVAHAMYERLATTYGRFRGTLPPRGRVLSKTQERIAKELLVADLLVEPPLSDIALACGLSVRQFVDAF
RSTTGMPPFRWLRAYRIERAKELLRRTSFSLAEIGAACGFADQSHFTRTFSAATGTTPGDWRRACGA

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33611; Mature: 33611

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLATSSVTTQSYAREFARLFNVDTAHTLTTTSLKTAQLTATHMCSSVHGLGKSTPLPTE
CCCCCCHHHHHHHHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC
DAYILSLQLQHSGGAELWKRGRRVPTEPYAPGSIMLGHLSDEPVANLPDPFECILFHIPR
CEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHEEECCC
PAFDELCGLSALPPVGELDDVNRTIDPVLHHLGLALVPAMADPQLAGSLFFDHVAHAMYE
CHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RLATTYGRFRGTLPPRGRVLSKTQERIAKELLVADLLVEPPLSDIALACGLSVRQFVDAF
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHH
RSTTGMPPFRWLRAYRIERAKELLRRTSFSLAEIGAACGFADQSHFTRTFSAATGTTPGD
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHH
WRRACGA
HHHHCCC
>Mature Secondary Structure
MRLATSSVTTQSYAREFARLFNVDTAHTLTTTSLKTAQLTATHMCSSVHGLGKSTPLPTE
CCCCCCHHHHHHHHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC
DAYILSLQLQHSGGAELWKRGRRVPTEPYAPGSIMLGHLSDEPVANLPDPFECILFHIPR
CEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHEEECCC
PAFDELCGLSALPPVGELDDVNRTIDPVLHHLGLALVPAMADPQLAGSLFFDHVAHAMYE
CHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RLATTYGRFRGTLPPRGRVLSKTQERIAKELLVADLLVEPPLSDIALACGLSVRQFVDAF
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHH
RSTTGMPPFRWLRAYRIERAKELLRRTSFSLAEIGAACGFADQSHFTRTFSAATGTTPGD
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHH
WRRACGA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA