| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is nodV [H]
Identifier: 91782934
GI number: 91782934
Start: 1743143
End: 1745065
Strand: Direct
Name: nodV [H]
Synonym: Bxe_A2886
Alternate gene names: 91782934
Gene position: 1743143-1745065 (Clockwise)
Preceding gene: 91782925
Following gene: 91782935
Centisome position: 35.6
GC content: 59.59
Gene sequence:
>1923_bases ATGTCTCCACGGCCTGGTTTTTTAACAGGGGCTGGCGCGGGTCACGAGGCGGCAGGCCAGTGGCACGCCACGGGAGGTAG CGTGGGTGGCAAGCTAGGTTCGTCGGACAGGAGCAGCCAGTGGCGCTATCTGGTGCGGCTGTGGATTGGCGGAAGCCTTA TCCTCTGCGCTGTTGCATGGCTTTGCCTGAGTCTTGACCTCAGGATTGCCACCACCGGTTTCTGCATGCTGATTGTCATT GTGCTGCTGTCTCTTCTCGACAGCTTCATTTCCTCCGCAATCTTCTCGATCGTTGGCGGCTTACTGCTCAACGTCTACTT CACGCCGCCTCTTTATAGCTTTGCCATCGAGAAACCGCTGGACATCCTGCCGATAGCGGCATTTTTTATTACTTCAATTG CCATTACGTCGCTTGTCCGGCGTATCCGCACGGCCGAACGCTTCCAGCGGGAGCAGGCGAGGCTACTGGACCAGACTCAC GATACGGTGTTCGTGCGTGACCCACAGGATGTGATTACGTACTGGAATCACGCGGCGGAAGTACTCTACGGATGGAGTAA GGATGAGGCAGTCGGAAAGGTTGTCGACAGCCTGCTCAAAACTGTATTCCTCATGCCGAAAGAAGAAGTGCAACGCGTAC TGGCTCGCGATGGATACTGGGAAGGGGATCTGGTCCACACAAAGCGCGACGGCTCGGCCGTTATCGTGGCGAGCCGCTGG ACGCTACAGCGTGACAGTCGCGGAGTCCCCTGCGCAACGCTGGAAACGAACAACGACATCACGCAACGCAGGCGGGCCGA AGAACTGATCCGGAAAAGTCAGGCGCAGTACCTTGCCGAAGCCCAGCAACTGAGCCGTACGGGAAGCTTTGGCTGGAACG TCGCTACCGGCGAACTTTTCTGGTCGGAGGAGGCATTCCGTATTTTTGAGTACGACCTCACGCGTGCACCGACGCTTGAG TCCGTGCGCGAGCGGCTTCATCCGGAGGACGTCCATATCTTCGAGCGCATGCTGCTGCAGGTAAGCGGTACGGCGGATGA TTTCGACATCGAGCACCGTCTACTTTTCCCGGATGGTCGTGTGAAGCATTTGCACGTGGTGGCCCATGCTTCCGAAGCCA CGGGCGGCAGCCGTCAGTTCATTGGCGCTGTCATGGATGTGACGAATGCGCGCGAGACCGAGATGCAACTTTGGCAGACG CAAAGCGAACTCGCCCGTGCCAGCCGTATCTCGGCTCTGGGCGAGCTGAGCGCCTCGATTGCTCATGAAGTCGGACAGCC GCTTGCTGCCATCATCACGAGCGGCGAAGCCTGTCTGCGATGGCTGCATCGTAACCCACCCAATATGGAGGAAATCGAAG GCTGTGTGACCGAAATGACCAGCGAGGGTACGCGGGCAGCCGGAATCGTCCAGCGGGTGAGAAGACTGATGAAGGGCGCA CCGCCCGAACACGCGCCGGTGGAGGTCAACGACCTGGTCGACGAGGTGGTCGCACTCACCAAGGGCGAGATGGAGAGTCA TGCATGCTGCCTGACGTTGCAGCTCGCGCGCGAGATGCCTGTCGTGCTGGGCGACCGCGTGCAGCTTCAGCAGGTGCTCA TCAATATCATCATCAATGGGTTGCAGTCGATGGCCGCCGTGCCGGGCAAGCATCGGCTAACCGTGAGTTCCTCGACCGAC GGCGACGGCAACGTCATACTCGCCGTGCGCGATAGCGGCCCGGGCATCAGCACGGCAAATCTCCCGCGCCTCTTCGATGC CTTCTTCACCACCCGTAGTACCGGCATGGGCATGGGGCTCGCTATCTGTAACTCGATTGTCGAAGCGCACGGAGGCCAGA TTCTTGCCTCCAACAACACCGGGGGCGGTGCGACATTCAGCGTCATACTGCCTGCGGCTCATGCATCCATCGCCACGGCC TGA
Upstream 100 bases:
>100_bases TATGTTTGTATATGATGGAGCTTGTACATGTTGCATAAAAAAGCCTTTTTCTTTCAAGCGTGTAAAGCCAATCAAGCCGA TTAGCCGGGCCTCCCGGCGA
Downstream 100 bases:
>100_bases CGAGGTGGCCACAAGCGGATGCGGTCCGGTACAACCCGCTTATACAATCGTATCATCGCGCAAGGCGCGGCTGTAAGGTA GTCTGTAAAAGACAAGACGG
Product: multi-sensor Signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 640; Mature: 639
Protein sequence:
>640_residues MSPRPGFLTGAGAGHEAAGQWHATGGSVGGKLGSSDRSSQWRYLVRLWIGGSLILCAVAWLCLSLDLRIATTGFCMLIVI VLLSLLDSFISSAIFSIVGGLLLNVYFTPPLYSFAIEKPLDILPIAAFFITSIAITSLVRRIRTAERFQREQARLLDQTH DTVFVRDPQDVITYWNHAAEVLYGWSKDEAVGKVVDSLLKTVFLMPKEEVQRVLARDGYWEGDLVHTKRDGSAVIVASRW TLQRDSRGVPCATLETNNDITQRRRAEELIRKSQAQYLAEAQQLSRTGSFGWNVATGELFWSEEAFRIFEYDLTRAPTLE SVRERLHPEDVHIFERMLLQVSGTADDFDIEHRLLFPDGRVKHLHVVAHASEATGGSRQFIGAVMDVTNARETEMQLWQT QSELARASRISALGELSASIAHEVGQPLAAIITSGEACLRWLHRNPPNMEEIEGCVTEMTSEGTRAAGIVQRVRRLMKGA PPEHAPVEVNDLVDEVVALTKGEMESHACCLTLQLAREMPVVLGDRVQLQQVLINIIINGLQSMAAVPGKHRLTVSSSTD GDGNVILAVRDSGPGISTANLPRLFDAFFTTRSTGMGMGLAICNSIVEAHGGQILASNNTGGGATFSVILPAAHASIATA
Sequences:
>Translated_640_residues MSPRPGFLTGAGAGHEAAGQWHATGGSVGGKLGSSDRSSQWRYLVRLWIGGSLILCAVAWLCLSLDLRIATTGFCMLIVI VLLSLLDSFISSAIFSIVGGLLLNVYFTPPLYSFAIEKPLDILPIAAFFITSIAITSLVRRIRTAERFQREQARLLDQTH DTVFVRDPQDVITYWNHAAEVLYGWSKDEAVGKVVDSLLKTVFLMPKEEVQRVLARDGYWEGDLVHTKRDGSAVIVASRW TLQRDSRGVPCATLETNNDITQRRRAEELIRKSQAQYLAEAQQLSRTGSFGWNVATGELFWSEEAFRIFEYDLTRAPTLE SVRERLHPEDVHIFERMLLQVSGTADDFDIEHRLLFPDGRVKHLHVVAHASEATGGSRQFIGAVMDVTNARETEMQLWQT QSELARASRISALGELSASIAHEVGQPLAAIITSGEACLRWLHRNPPNMEEIEGCVTEMTSEGTRAAGIVQRVRRLMKGA PPEHAPVEVNDLVDEVVALTKGEMESHACCLTLQLAREMPVVLGDRVQLQQVLINIIINGLQSMAAVPGKHRLTVSSSTD GDGNVILAVRDSGPGISTANLPRLFDAFFTTRSTGMGMGLAICNSIVEAHGGQILASNNTGGGATFSVILPAAHASIATA >Mature_639_residues SPRPGFLTGAGAGHEAAGQWHATGGSVGGKLGSSDRSSQWRYLVRLWIGGSLILCAVAWLCLSLDLRIATTGFCMLIVIV LLSLLDSFISSAIFSIVGGLLLNVYFTPPLYSFAIEKPLDILPIAAFFITSIAITSLVRRIRTAERFQREQARLLDQTHD TVFVRDPQDVITYWNHAAEVLYGWSKDEAVGKVVDSLLKTVFLMPKEEVQRVLARDGYWEGDLVHTKRDGSAVIVASRWT LQRDSRGVPCATLETNNDITQRRRAEELIRKSQAQYLAEAQQLSRTGSFGWNVATGELFWSEEAFRIFEYDLTRAPTLES VRERLHPEDVHIFERMLLQVSGTADDFDIEHRLLFPDGRVKHLHVVAHASEATGGSRQFIGAVMDVTNARETEMQLWQTQ SELARASRISALGELSASIAHEVGQPLAAIITSGEACLRWLHRNPPNMEEIEGCVTEMTSEGTRAAGIVQRVRRLMKGAP PEHAPVEVNDLVDEVVALTKGEMESHACCLTLQLAREMPVVLGDRVQLQQVLINIIINGLQSMAAVPGKHRLTVSSSTDG DGNVILAVRDSGPGISTANLPRLFDAFFTTRSTGMGMGLAICNSIVEAHGGQILASNNTGGGATFSVILPAAHASIATA
Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=282, Percent_Identity=31.2056737588652, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1790436, Length=231, Percent_Identity=29.8701298701299, Blast_Score=119, Evalue=4e-28, Organism=Escherichia coli, GI1788393, Length=227, Percent_Identity=29.9559471365639, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI145693157, Length=266, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1786783, Length=229, Percent_Identity=29.2576419213974, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1786912, Length=125, Percent_Identity=33.6, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI87081816, Length=242, Percent_Identity=25.2066115702479, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786600, Length=231, Percent_Identity=25.974025974026, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1790346, Length=222, Percent_Identity=27.027027027027, Blast_Score=63, Evalue=6e-11, Organism=Escherichia coli, GI1790300, Length=239, Percent_Identity=25.9414225941423, Blast_Score=62, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 69941; Mature: 69810
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS00059 ADH_ZINC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPRPGFLTGAGAGHEAAGQWHATGGSVGGKLGSSDRSSQWRYLVRLWIGGSLILCAVAW CCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH LCLSLDLRIATTGFCMLIVIVLLSLLDSFISSAIFSIVGGLLLNVYFTPPLYSFAIEKPL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC DILPIAAFFITSIAITSLVRRIRTAERFQREQARLLDQTHDTVFVRDPQDVITYWNHAAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH VLYGWSKDEAVGKVVDSLLKTVFLMPKEEVQRVLARDGYWEGDLVHTKRDGSAVIVASRW HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECE TLQRDSRGVPCATLETNNDITQRRRAEELIRKSQAQYLAEAQQLSRTGSFGWNVATGELF EECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEE WSEEAFRIFEYDLTRAPTLESVRERLHPEDVHIFERMLLQVSGTADDFDIEHRLLFPDGR ECCCHHHHEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCC VKHLHVVAHASEATGGSRQFIGAVMDVTNARETEMQLWQTQSELARASRISALGELSASI EEEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHEVGQPLAAIITSGEACLRWLHRNPPNMEEIEGCVTEMTSEGTRAAGIVQRVRRLMKGA HHHHCCHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC PPEHAPVEVNDLVDEVVALTKGEMESHACCLTLQLAREMPVVLGDRVQLQQVLINIIING CCCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHH LQSMAAVPGKHRLTVSSSTDGDGNVILAVRDSGPGISTANLPRLFDAFFTTRSTGMGMGL HHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHH AICNSIVEAHGGQILASNNTGGGATFSVILPAAHASIATA HHHHHHHHHCCCEEEEECCCCCCEEEEEEEEHHHHHHCCC >Mature Secondary Structure SPRPGFLTGAGAGHEAAGQWHATGGSVGGKLGSSDRSSQWRYLVRLWIGGSLILCAVAW CCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH LCLSLDLRIATTGFCMLIVIVLLSLLDSFISSAIFSIVGGLLLNVYFTPPLYSFAIEKPL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC DILPIAAFFITSIAITSLVRRIRTAERFQREQARLLDQTHDTVFVRDPQDVITYWNHAAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH VLYGWSKDEAVGKVVDSLLKTVFLMPKEEVQRVLARDGYWEGDLVHTKRDGSAVIVASRW HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECE TLQRDSRGVPCATLETNNDITQRRRAEELIRKSQAQYLAEAQQLSRTGSFGWNVATGELF EECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEE WSEEAFRIFEYDLTRAPTLESVRERLHPEDVHIFERMLLQVSGTADDFDIEHRLLFPDGR ECCCHHHHEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCC VKHLHVVAHASEATGGSRQFIGAVMDVTNARETEMQLWQTQSELARASRISALGELSASI EEEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHEVGQPLAAIITSGEACLRWLHRNPPNMEEIEGCVTEMTSEGTRAAGIVQRVRRLMKGA HHHHCCHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC PPEHAPVEVNDLVDEVVALTKGEMESHACCLTLQLAREMPVVLGDRVQLQQVLINIIING CCCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHH LQSMAAVPGKHRLTVSSSTDGDGNVILAVRDSGPGISTANLPRLFDAFFTTRSTGMGMGL HHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHH AICNSIVEAHGGQILASNNTGGGATFSVILPAAHASIATA HHHHHHHHHCCCEEEEECCCCCCEEEEEEEEHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2320582; 11157954; 12597275 [H]