Click here to switch to the map view.

The map label for this gene is yafC [H]

Identifier: 91782875

GI number: 91782875

Start: 1663662

End: 1664558

Strand: Direct

Name: yafC [H]

Synonym: Bxe_A2948

Alternate gene names: 91782875

Gene position: 1663662-1664558 (Clockwise)

Preceding gene: 91782872

Following gene: 91782876

Centisome position: 33.98

GC content: 64.55

Gene sequence:

>897_bases
ATGAAAACTTCGACCGACGAGTTGCTGGTGTTCGTCACGGTGATCGACAGCGGCTCGATCACCGCGGCCGCCGAGAAATT
GGGCCAAACCGTTTCCGGGGTGAGCCGCGCGCTCGCGCGCCTCGAAAAGAAACTCGATACCGCGCTGGTGCGGCGCACGA
CACGCCGTCTGCAACTCACCGAAGAAGGCGAGACCTTCCTGCAACACGCCCGCGCGATTCTGCACGCAATGGAAGAGGCC
GAAGAGTCCGTCACGCGAGGACGCGAGCGGCCTTCGGGACGCTTGCGTGTCGATGCCGCGTCGCCCTTCATGCTGCATTG
CGTGGCGCCGCATATGACGGCGTTTTCGGCGCTGTATCCGGAGATCCGGCTGGAGTTGACGAGCAACGAACGGATCGTCG
ATCTGCTGGAGCAGAAGGTGGACATCGCGATTCGCATCGGCGAGTTGCAGGATTCGACCTTGCATGCGCGTGCGTTGGGC
ACCAGCAAGCTGCGCGTGCTCGCGAGCCCGGCGTATCTGGCTGAATATGGCGAACCCAGATCGGTGGAGGCGTTGCGCGA
GCATCGGCTGATCGGCTTCACGGCGCCCGAGCACCTGAACCGCTGGCCGTTGCGGGAAGGGCGCAAGGGCGGGGCCGAAG
CGCTGAAGATCGAACCGGCGATCACCGCATCGAGCGGCGAGACATTGCGGCAACTGGCGTTGTCGGGCTGGGGCATCGCG
TGTCTGGCCGACTTCATGAGCGCCGCCGACGTGCGCGAAAAGCGCCTCGTGCCGATTCTCGGCAACGTGCTGGTGGATGA
ACGGCAGCGGGTGAGCGCGGTGTATTACCAGAGCGCGTCGCTGGCGGGGCGCGTGCAGTGTTTTCTGGATTTCATCGCGG
CGCGCGTGAAGCTCTAG

Upstream 100 bases:

>100_bases
CTCCTTGGTGAGAAACACGATGACATGCACACAGTATCCGCCTTCCTGATTCTCGCAAAAAGCGTGTTAGTCTCAAATCA
AACTTGATTTGAAATCAACA

Downstream 100 bases:

>100_bases
CGACGTTGTGCGATTCATTCGCCTGAAACGAAGCCCGCGGCTTGCCTGAGTTCGCGGGCTTTTTTGCGCCGTCGGCAGCC
TCGCCTATAACGCTCTCATG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALARLEKKLDTALVRRTTRRLQLTEEGETFLQHARAILHAMEEA
EESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYPEIRLELTSNERIVDLLEQKVDIAIRIGELQDSTLHARALG
TSKLRVLASPAYLAEYGEPRSVEALREHRLIGFTAPEHLNRWPLREGRKGGAEALKIEPAITASSGETLRQLALSGWGIA
CLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDFIAARVKL

Sequences:

>Translated_298_residues
MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALARLEKKLDTALVRRTTRRLQLTEEGETFLQHARAILHAMEEA
EESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYPEIRLELTSNERIVDLLEQKVDIAIRIGELQDSTLHARALG
TSKLRVLASPAYLAEYGEPRSVEALREHRLIGFTAPEHLNRWPLREGRKGGAEALKIEPAITASSGETLRQLALSGWGIA
CLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDFIAARVKL
>Mature_298_residues
MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALARLEKKLDTALVRRTTRRLQLTEEGETFLQHARAILHAMEEA
EESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYPEIRLELTSNERIVDLLEQKVDIAIRIGELQDSTLHARALG
TSKLRVLASPAYLAEYGEPRSVEALREHRLIGFTAPEHLNRWPLREGRKGGAEALKIEPAITASSGETLRQLALSGWGIA
CLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDFIAARVKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=43.4343434343434, Blast_Score=264, Evalue=5e-72,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=32.0689655172414, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=30.9027777777778, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=28.9655172413793, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=28.1786941580756, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787589, Length=264, Percent_Identity=28.7878787878788, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787128, Length=197, Percent_Identity=29.4416243654822, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789173, Length=290, Percent_Identity=26.551724137931, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786448, Length=203, Percent_Identity=29.064039408867, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=188, Percent_Identity=27.1276595744681, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=259, Percent_Identity=25.8687258687259, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=255, Percent_Identity=28.2352941176471, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788297, Length=142, Percent_Identity=33.0985915492958, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32880; Mature: 32880

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALARLEKKLDTALVRRTTRRLQLT
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
EEGETFLQHARAILHAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHCC
EIRLELTSNERIVDLLEQKVDIAIRIGELQDSTLHARALGTSKLRVLASPAYLAEYGEPR
EEEEEECCCCHHHHHHHHHHCEEEEECCCCCCHHHHHHHCCHHHHEEECCHHHHHCCCCC
SVEALREHRLIGFTAPEHLNRWPLREGRKGGAEALKIEPAITASSGETLRQLALSGWGIA
CHHHHHHCCEEEECCHHHCCCCCCCCCCCCCCCEEEECCCEECCCCHHHHHHHHCCCCHH
CLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDFIAARVKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALARLEKKLDTALVRRTTRRLQLT
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
EEGETFLQHARAILHAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHCC
EIRLELTSNERIVDLLEQKVDIAIRIGELQDSTLHARALGTSKLRVLASPAYLAEYGEPR
EEEEEECCCCHHHHHHHHHHCEEEEECCCCCCHHHHHHHCCHHHHEEECCHHHHHCCCCC
SVEALREHRLIGFTAPEHLNRWPLREGRKGGAEALKIEPAITASSGETLRQLALSGWGIA
CHHHHHHCCEEEECCHHHCCCCCCCCCCCCCCCEEEECCCEECCCCHHHHHHHHCCCCHH
CLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDFIAARVKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]