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The map label for this gene is soxS [C]

Identifier: 91782842

GI number: 91782842

Start: 1622924

End: 1623919

Strand: Direct

Name: soxS [C]

Synonym: Bxe_A2983

Alternate gene names: 91782842

Gene position: 1622924-1623919 (Clockwise)

Preceding gene: 91782841

Following gene: 91782843

Centisome position: 33.15

GC content: 64.36

Gene sequence:

>996_bases
ATGCCGCACATGCACCTTGATACTGCGAGGATCACCTGGCTGCATACGCCCACGCTGAGCGCGCGTAGCGCAACGCGGCG
AATCGGCGTGTTGCTGTTCGACGGTTTCTGGCTGCTCGGGCCGGGCACGGTGGTGGAGATGTTCCAGACCGCCAACGAAC
TATCGGGCTCAGGAGCCGGTGAAGAACAGCCTTACGAAGTGCAATTCCTTTCAATGGACGGCGGCAGCGTCGCCAGTTCT
TCTTCCGCGCGCATCTGGACTGACCGTATCGACGCGCGCTTCGGCAGCGGTTTCGACGTGCTGTTCATCGCGGGCGGCTA
CGGTGCGCATGTGGCTGCGCGCGACGAGCGGGTGCTCGGCTGGCTGCGTTCGGTGCAGTCGCGCACTCGCGCGATCGAAA
CGATCGGCGAAGGGCGGCTCGTCCTGGAAGCGGCGGGGCCGTCGGATCACGACGCACCGCACGTGAACCGTTATCTGAAC
AGCGTGACGAGCGAGTCCGCGCTCAGCGCGTCCAATGATCGTCATGACTGTGCGCGCAGCGCGCTCATGTTCATCAAACG
CGACCTTGGCGCTGAACTTGCCCGCAGCGTCGCCGATCGCGTGATGCCCGGCATGGCGGCCACCTGGGTGCCGCTGCCGG
CGGAAGGCGGCACACTCAGCGTGGCCGAGAAAATCCGTGCCGCGGCGCGCTGGATGGAAGCGAATTGCGACCGCCCGGTT
TCGGTAGCGGACGCCGCGCAGGTCGCGGCGATGAGCGAGCGCAATTTCCTGCGGCGCTTCAAGCATGAAATGCAGCTCAC
GCCTTCGGACTATCTGTTGCAGATACGGTTGCGCATTGCCTGCAACTTCCTCACCGAAACCGAATTGCCGGTCGACAAGA
TCGCTCGCCGCAGCGGAACGGGCAACGGCGATCGTCTCGCGAAGATTTTCCGCAAGCGCATGGCGTTGTCTCCAACCGAA
TATCGCGCCCGCAGCCGGATCACGACGCAGGCGTAG

Upstream 100 bases:

>100_bases
AAGCGGCATAGTTCGCAATCACCACTTTCATAATCATTGCGCTCATATCGGCCGCCGACGGAATCGGGGTCCACAATGTA
CGACAGTCTGGGGAAATATC

Downstream 100 bases:

>100_bases
TATTCATGGAGGCGCCCGTGCCGGCAGCAGCGGCGCGCCTGATGAGAACTGGACGCGGCCGTCGTGTTGGCCGCGTTTTC
GCCGGTCAGGCTTCTTGAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC-Family Transcriptional Regulator; AraC Family Transcription Regulator; ThiJ/PfpI Domain-Containing Protein; ADPA Family Transcriptional Regulator; AraC Family Regulatory Protein; Transcriptional Regulator AraC Family Protein; AraC Family Transcription Regulator Protein; L-Rhamnose Operon Transcriptional Activator; Transcriptional Regulator Arac Family; Transcriptional Activator FtrA; ADPA-Family Transcriptional Regulator; Regulatory Protein; GATase1_AraC_1 Family Transcriptional Regulator; ARAC Family Transcriptional Regulator; AraC-Family Protein Transcriptional Regulator; Transcription Regulator; Xylose Operon Regulatory Protein

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MPHMHLDTARITWLHTPTLSARSATRRIGVLLFDGFWLLGPGTVVEMFQTANELSGSGAGEEQPYEVQFLSMDGGSVASS
SSARIWTDRIDARFGSGFDVLFIAGGYGAHVAARDERVLGWLRSVQSRTRAIETIGEGRLVLEAAGPSDHDAPHVNRYLN
SVTSESALSASNDRHDCARSALMFIKRDLGAELARSVADRVMPGMAATWVPLPAEGGTLSVAEKIRAAARWMEANCDRPV
SVADAAQVAAMSERNFLRRFKHEMQLTPSDYLLQIRLRIACNFLTETELPVDKIARRSGTGNGDRLAKIFRKRMALSPTE
YRARSRITTQA

Sequences:

>Translated_331_residues
MPHMHLDTARITWLHTPTLSARSATRRIGVLLFDGFWLLGPGTVVEMFQTANELSGSGAGEEQPYEVQFLSMDGGSVASS
SSARIWTDRIDARFGSGFDVLFIAGGYGAHVAARDERVLGWLRSVQSRTRAIETIGEGRLVLEAAGPSDHDAPHVNRYLN
SVTSESALSASNDRHDCARSALMFIKRDLGAELARSVADRVMPGMAATWVPLPAEGGTLSVAEKIRAAARWMEANCDRPV
SVADAAQVAAMSERNFLRRFKHEMQLTPSDYLLQIRLRIACNFLTETELPVDKIARRSGTGNGDRLAKIFRKRMALSPTE
YRARSRITTQA
>Mature_330_residues
PHMHLDTARITWLHTPTLSARSATRRIGVLLFDGFWLLGPGTVVEMFQTANELSGSGAGEEQPYEVQFLSMDGGSVASSS
SARIWTDRIDARFGSGFDVLFIAGGYGAHVAARDERVLGWLRSVQSRTRAIETIGEGRLVLEAAGPSDHDAPHVNRYLNS
VTSESALSASNDRHDCARSALMFIKRDLGAELARSVADRVMPGMAATWVPLPAEGGTLSVAEKIRAAARWMEANCDRPVS
VADAAQVAAMSERNFLRRFKHEMQLTPSDYLLQIRLRIACNFLTETELPVDKIARRSGTGNGDRLAKIFRKRMALSPTEY
RARSRITTQA

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36362; Mature: 36231

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHMHLDTARITWLHTPTLSARSATRRIGVLLFDGFWLLGPGTVVEMFQTANELSGSGAG
CCCCCCCCEEEEEEECCCCCHHHHHHHHEEEEECCEEEECCHHHHHHHHHHHHHCCCCCC
EEQPYEVQFLSMDGGSVASSSSARIWTDRIDARFGSGFDVLFIAGGYGAHVAARDERVLG
CCCCEEEEEEEECCCCCCCCCCCEEEHHHHHHHCCCCCEEEEEECCCCCEEECCHHHHHH
WLRSVQSRTRAIETIGEGRLVLEAAGPSDHDAPHVNRYLNSVTSESALSASNDRHDCARS
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ALMFIKRDLGAELARSVADRVMPGMAATWVPLPAEGGTLSVAEKIRAAARWMEANCDRPV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
SVADAAQVAAMSERNFLRRFKHEMQLTPSDYLLQIRLRIACNFLTETELPVDKIARRSGT
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
GNGDRLAKIFRKRMALSPTEYRARSRITTQA
CCHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
PHMHLDTARITWLHTPTLSARSATRRIGVLLFDGFWLLGPGTVVEMFQTANELSGSGAG
CCCCCCCEEEEEEECCCCCHHHHHHHHEEEEECCEEEECCHHHHHHHHHHHHHCCCCCC
EEQPYEVQFLSMDGGSVASSSSARIWTDRIDARFGSGFDVLFIAGGYGAHVAARDERVLG
CCCCEEEEEEEECCCCCCCCCCCEEEHHHHHHHCCCCCEEEEEECCCCCEEECCHHHHHH
WLRSVQSRTRAIETIGEGRLVLEAAGPSDHDAPHVNRYLNSVTSESALSASNDRHDCARS
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ALMFIKRDLGAELARSVADRVMPGMAATWVPLPAEGGTLSVAEKIRAAARWMEANCDRPV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
SVADAAQVAAMSERNFLRRFKHEMQLTPSDYLLQIRLRIACNFLTETELPVDKIARRSGT
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
GNGDRLAKIFRKRMALSPTEYRARSRITTQA
CCHHHHHHHHHHHHCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA