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The map label for this gene is exbD1 [H]

Identifier: 91782827

GI number: 91782827

Start: 1602989

End: 1603411

Strand: Direct

Name: exbD1 [H]

Synonym: Bxe_A2998

Alternate gene names: 91782827

Gene position: 1602989-1603411 (Clockwise)

Preceding gene: 91782826

Following gene: 91782828

Centisome position: 32.74

GC content: 58.63

Gene sequence:

>423_bases
ATGGCAATGAGCGTTGGGCAGGACGACAACGACGAGGTCATCTCCAGTATCAACACTACGCCGCTCGTCGACGTGATGCT
GGTTCTGCTGATCATCTTTCTGATCACGATTCCGGTCGTGACGCATACGGTGCCGGTGCAATTGCCGAAGGAGACGATCC
AGCCGCTGCAGACTACGCCGAAAAGTATCGTCATCGCGGTCAATCGCGACGGCGACTTCTTCTGGAACGAGAAGCAGGTC
GACGGGCCTACGCTGCTGGCACGCCTGAAGACCGTGTCGGTCATGACGCCGCAACCGGAAGTGCATGTTCGCGGCGACCA
GAACGCGCGTTATGAATTTATCGGTCGGGTCATTACCGAGTGCGAGCGCGCTGGTATTGCGAAGGTTTCGTTTATTACTG
AGCCGCCCGCGCGCGGGGGGTGA

Upstream 100 bases:

>100_bases
ATTCGGCGCGCAACTGCATACCGTTCTGCTGGCCGGCAGCCGTCGCCCGGCGCGTGCCGCGGCTCGCGAAGCGTCGCTGG
TTCAATAAGCGGAGTCTGTC

Downstream 100 bases:

>100_bases
CTTTGCATGGGACCGCACTAAGTGCGGTGCATGGGACCAGAGTAAGCGCTAAAGCACTAACTCTGGTCGACAGCTAAAGC
ACTAAGTCCGGTCGACAGCT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MAMSVGQDDNDEVISSINTTPLVDVMLVLLIIFLITIPVVTHTVPVQLPKETIQPLQTTPKSIVIAVNRDGDFFWNEKQV
DGPTLLARLKTVSVMTPQPEVHVRGDQNARYEFIGRVITECERAGIAKVSFITEPPARGG

Sequences:

>Translated_140_residues
MAMSVGQDDNDEVISSINTTPLVDVMLVLLIIFLITIPVVTHTVPVQLPKETIQPLQTTPKSIVIAVNRDGDFFWNEKQV
DGPTLLARLKTVSVMTPQPEVHVRGDQNARYEFIGRVITECERAGIAKVSFITEPPARGG
>Mature_139_residues
AMSVGQDDNDEVISSINTTPLVDVMLVLLIIFLITIPVVTHTVPVQLPKETIQPLQTTPKSIVIAVNRDGDFFWNEKQVD
GPTLLARLKTVSVMTPQPEVHVRGDQNARYEFIGRVITECERAGIAKVSFITEPPARGG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=32.6241134751773, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15407; Mature: 15276

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMSVGQDDNDEVISSINTTPLVDVMLVLLIIFLITIPVVTHTVPVQLPKETIQPLQTTP
CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
KSIVIAVNRDGDFFWNEKQVDGPTLLARLKTVSVMTPQPEVHVRGDQNARYEFIGRVITE
CEEEEEEECCCCEEECCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCCHHHHHHHHHHH
CERAGIAKVSFITEPPARGG
HHHCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AMSVGQDDNDEVISSINTTPLVDVMLVLLIIFLITIPVVTHTVPVQLPKETIQPLQTTP
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
KSIVIAVNRDGDFFWNEKQVDGPTLLARLKTVSVMTPQPEVHVRGDQNARYEFIGRVITE
CEEEEEEECCCCEEECCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCCHHHHHHHHHHH
CERAGIAKVSFITEPPARGG
HHHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]