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The map label for this gene is ltrA [H]

Identifier: 91782799

GI number: 91782799

Start: 1564608

End: 1565618

Strand: Direct

Name: ltrA [H]

Synonym: Bxe_A3026

Alternate gene names: 91782799

Gene position: 1564608-1565618 (Clockwise)

Preceding gene: 91782797

Following gene: 91782800

Centisome position: 31.96

GC content: 65.78

Gene sequence:

>1011_bases
ATGCATGATAATCGGGTCATGGCGCACAGCGTTTATGTTGCGAATGCATCAATAGACTGGTCGCACTCACGGAATCCCAC
GATGACCCCAACGGAGCTTTTCGCCTTGCTGCCGGACATGGCGGTGTTTGCGCGCGTCGTCGATGCCGGCAATTTCTCGG
TGGCGGCGCGGCAACTCGGCAGCACGCCGTCCACGGTCAGCCGCCAGATCAAGCGGCTCGAAGACGCGCTTGCAACCCGT
TTGCTCGAACGCTCCACGCGCACGGTGCGGGTCACCGAATCCGGCGCACAGGTGGCGCGATTCTGTCGCGACATGGTGAG
CGCCGCGTCGGGCGCGGTCGATGCGGCCGGGCAACTGGCCGGCAAGCCGCAGGGCAAGGTGAGCGTCAGCGCGCCGACCC
AGTTCGCGAAGTCCGTGATTCATCCGCTGATCCCCGGCTTCCTGCGCGCTTACGGCGAGGTGGACCTGCAACTCCTTTTC
ACCGATCGCGACGTCGATCCGCTCGCCGACGGTATCGATCTGGTGATCCGCCTGACCGAGCATCCGCCGCAGGGTCTCGC
GGGGCGCCGGCTGGGCGCGGTGCGCTGGCTGCTGGTGGCGTCGCCGGCGTATTTGCGCGAGCGCGGTACGCCGGCGCAGC
CACGCGATCTGCTGAAACACGCATGCATCTATCTCGGCGAGACGGCCGACGACAACCGCTGGCGCTTTCGCCGCGGCACC
GAGACACAGAGTGTCGACGTGAAGGGGCGCTACATTGCGAATCACGCCGGCGCACGGCTCGAAGCCGCGCTGCAGGACTT
CGGTATTGCGTGCGTGCCGGAGTTTGCCGCCGCCGAGTGGTTGCCGGGCGGCGAACTCGTACAGGTGCTGCCGGACTGGA
ATCTCGAAGCGCGCGCATACGTGGGGTCGGTGTGGCTGCTGTATCCGCCGAACCGTTTCCTGCCGCCGAAGGTGAGGGCG
TTGATCGACTACCTCGTCGAGCATTTACATGACGTGCTCGATACGGCGTGA

Upstream 100 bases:

>100_bases
GCGACAGCAAGCAGCATCAGATCGGACAGCATGAGCAGGCGTTCCTGTTTCGACATGGCGAACCTCGAGTTAGAAAGTCC
GTATTGTCGAGCTTTGCGCG

Downstream 100 bases:

>100_bases
GAACGACAGCATGCGTGGCGAATGGCGCGGAATAGCTTCGCGCGGTTAGTTCGCAGACCAGAAGAACGTAGAGTCGCCCG
CGTAATCCACGATTCAATGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MHDNRVMAHSVYVANASIDWSHSRNPTMTPTELFALLPDMAVFARVVDAGNFSVAARQLGSTPSTVSRQIKRLEDALATR
LLERSTRTVRVTESGAQVARFCRDMVSAASGAVDAAGQLAGKPQGKVSVSAPTQFAKSVIHPLIPGFLRAYGEVDLQLLF
TDRDVDPLADGIDLVIRLTEHPPQGLAGRRLGAVRWLLVASPAYLRERGTPAQPRDLLKHACIYLGETADDNRWRFRRGT
ETQSVDVKGRYIANHAGARLEAALQDFGIACVPEFAAAEWLPGGELVQVLPDWNLEARAYVGSVWLLYPPNRFLPPKVRA
LIDYLVEHLHDVLDTA

Sequences:

>Translated_336_residues
MHDNRVMAHSVYVANASIDWSHSRNPTMTPTELFALLPDMAVFARVVDAGNFSVAARQLGSTPSTVSRQIKRLEDALATR
LLERSTRTVRVTESGAQVARFCRDMVSAASGAVDAAGQLAGKPQGKVSVSAPTQFAKSVIHPLIPGFLRAYGEVDLQLLF
TDRDVDPLADGIDLVIRLTEHPPQGLAGRRLGAVRWLLVASPAYLRERGTPAQPRDLLKHACIYLGETADDNRWRFRRGT
ETQSVDVKGRYIANHAGARLEAALQDFGIACVPEFAAAEWLPGGELVQVLPDWNLEARAYVGSVWLLYPPNRFLPPKVRA
LIDYLVEHLHDVLDTA
>Mature_336_residues
MHDNRVMAHSVYVANASIDWSHSRNPTMTPTELFALLPDMAVFARVVDAGNFSVAARQLGSTPSTVSRQIKRLEDALATR
LLERSTRTVRVTESGAQVARFCRDMVSAASGAVDAAGQLAGKPQGKVSVSAPTQFAKSVIHPLIPGFLRAYGEVDLQLLF
TDRDVDPLADGIDLVIRLTEHPPQGLAGRRLGAVRWLLVASPAYLRERGTPAQPRDLLKHACIYLGETADDNRWRFRRGT
ETQSVDVKGRYIANHAGARLEAALQDFGIACVPEFAAAEWLPGGELVQVLPDWNLEARAYVGSVWLLYPPNRFLPPKVRA
LIDYLVEHLHDVLDTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=31.6151202749141, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=30.4794520547945, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI145693193, Length=307, Percent_Identity=33.8762214983713, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=30.5369127516779, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=28.8659793814433, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=28.4745762711864, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=26.7123287671233, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789173, Length=249, Percent_Identity=30.1204819277108, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790011, Length=259, Percent_Identity=23.1660231660232, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36904; Mature: 36904

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDNRVMAHSVYVANASIDWSHSRNPTMTPTELFALLPDMAVFARVVDAGNFSVAARQLG
CCCCEEEEEEEEEEECEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
STPSTVSRQIKRLEDALATRLLERSTRTVRVTESGAQVARFCRDMVSAASGAVDAAGQLA
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHC
GKPQGKVSVSAPTQFAKSVIHPLIPGFLRAYGEVDLQLLFTDRDVDPLADGIDLVIRLTE
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHCCCEEEEEECC
HPPQGLAGRRLGAVRWLLVASPAYLRERGTPAQPRDLLKHACIYLGETADDNRWRFRRGT
CCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCC
ETQSVDVKGRYIANHAGARLEAALQDFGIACVPEFAAAEWLPGGELVQVLPDWNLEARAY
CCCEEECCCEEECCCCCHHHHHHHHHCCCEECCHHHHHHCCCCCCEEEECCCCCCCEEEE
VGSVWLLYPPNRFLPPKVRALIDYLVEHLHDVLDTA
ECEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHDNRVMAHSVYVANASIDWSHSRNPTMTPTELFALLPDMAVFARVVDAGNFSVAARQLG
CCCCEEEEEEEEEEECEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
STPSTVSRQIKRLEDALATRLLERSTRTVRVTESGAQVARFCRDMVSAASGAVDAAGQLA
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHC
GKPQGKVSVSAPTQFAKSVIHPLIPGFLRAYGEVDLQLLFTDRDVDPLADGIDLVIRLTE
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHCCCEEEEEECC
HPPQGLAGRRLGAVRWLLVASPAYLRERGTPAQPRDLLKHACIYLGETADDNRWRFRRGT
CCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCC
ETQSVDVKGRYIANHAGARLEAALQDFGIACVPEFAAAEWLPGGELVQVLPDWNLEARAY
CCCEEECCCEEECCCCCHHHHHHHHHCCCEECCHHHHHHCCCCCCEEEECCCCCCCEEEE
VGSVWLLYPPNRFLPPKVRALIDYLVEHLHDVLDTA
ECEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]