| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
Click here to switch to the map view.
The map label for this gene is lldD [H]
Identifier: 91782463
GI number: 91782463
Start: 1210057
End: 1211277
Strand: Direct
Name: lldD [H]
Synonym: Bxe_A3368
Alternate gene names: 91782463
Gene position: 1210057-1211277 (Clockwise)
Preceding gene: 91782462
Following gene: 91782464
Centisome position: 24.72
GC content: 69.29
Gene sequence:
>1221_bases ATGGCCGATACGATTACCTGTGTCGACGATCTGCAGCGGCTCGCGCGCCGGCGCGTGCCGAAGATTTTCTACGACTACGT GGACAGCGGCTCGTGGACCGAGTCCACCTATCGGGCGAACGAAACGGACCTCGGCAGCCTGAGGTTCCGCCAGCGCGTGG GCTGCAACGTCGAGGCGATCCGCACCGCGTCGACGCTGCTCGGCCACGCGTGCAGCCTGCCGCTCGCGCTTGCGCCGACC GGCCTCGCAGGCATGGTGCACGCGGACGGCGAGATCCTCGCCGCGCGGGCGGCCGCAAGGTTCGGCGTACCGTTCACGCT GTCCACGGTCAGCATCTGCTCGATCGAGGACGTGGCCGAGCAGGTCGCGCAGCCGTTCTGGTTCCAGCTGTACATGATGA AGGACCGCGATTTCATCGTCCGGCTGATCGAGCGCGCGCGCGACGCGGGCTGCTCCGCGCTCGTGCTGACGCTCGATCTG CCGATCCAGGGGCAGCGCCACAAGGACGTGCGCAACGGCCTGTCGGTGCCGCCGAAACTGAACGTGCGAAATCTGTCCAC CATGCTGTCGCGGCCCGCATGGTGCGCGCGCATGCTGGGCACGCGGCGGCGCACGTTCGGCAATATCGTCGGGCATGCGA AGGGCGTATCGGACACGTTCGCGTTCGCGGAATGGGTGAGCCGGCAGTTCGACCGCAGCGTGACGTGGGACGACGTCCGC TGGATCAAGCGCCATTGGGGCGGCCGGCTGATCGTGAAGGGCATTCTCGACGCCGACGACGCGCGCCTCGCGGTCGCGGC CGGCGCCGATGCGATCGTCGTGTCGAACCACGGCGGCCGGCAACTGGACGGCGCGCCCTCGTCGATCAGCGCGTTGCCGG CGATCGCCGCGGCGGTCGGCAGGCAGACCGAAGTACTGATGGACGGCGGCATCCGCAGCGGCCAGGACGTGCTGCGCGCA CTCGCATGGGGCGCGCACGGCGTGATGATCGGCCGTGCGTTTCTATACGGCCTCGGCGCGCTCGGTGAGGCGGGCGTCAC GCGCACGCTCGAACTCATCCAGAAGGAACTCGAATCGACGATGGCGCTGTGCGGCATCACCGACGTCGCCGACGTCGGCC GCGACGCGATCGTCTCGCCGGCGCACGGCGCCGCGCCCGCGTGGCCCGAACCGGTCGGCCGGCGCGTTGGTGAAAGCAAT CTTCCGGTGCTTGCTTCGTGA
Upstream 100 bases:
>100_bases GTCTACCTGCAGGCCGGCCAGACCGTGCGTGCCGGGATCGCGGGCCTTGGCGAGCAGTCGTCGCCGGTGGTCGCGTTCCA CGCGACAGCGCAGGCCTGAC
Downstream 100 bases:
>100_bases GCACCCCTTCATTTTTTCAAGGAGACATTTGATGTTCGGTAACTACAAGATGCACGAAGGCAGCGGTGTGAACCCGCCTT ACTCGCCCGCTTATCCCGTC
Product: L-lactate dehydrogenase (cytochrome)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MADTITCVDDLQRLARRRVPKIFYDYVDSGSWTESTYRANETDLGSLRFRQRVGCNVEAIRTASTLLGHACSLPLALAPT GLAGMVHADGEILAARAAARFGVPFTLSTVSICSIEDVAEQVAQPFWFQLYMMKDRDFIVRLIERARDAGCSALVLTLDL PIQGQRHKDVRNGLSVPPKLNVRNLSTMLSRPAWCARMLGTRRRTFGNIVGHAKGVSDTFAFAEWVSRQFDRSVTWDDVR WIKRHWGGRLIVKGILDADDARLAVAAGADAIVVSNHGGRQLDGAPSSISALPAIAAAVGRQTEVLMDGGIRSGQDVLRA LAWGAHGVMIGRAFLYGLGALGEAGVTRTLELIQKELESTMALCGITDVADVGRDAIVSPAHGAAPAWPEPVGRRVGESN LPVLAS
Sequences:
>Translated_406_residues MADTITCVDDLQRLARRRVPKIFYDYVDSGSWTESTYRANETDLGSLRFRQRVGCNVEAIRTASTLLGHACSLPLALAPT GLAGMVHADGEILAARAAARFGVPFTLSTVSICSIEDVAEQVAQPFWFQLYMMKDRDFIVRLIERARDAGCSALVLTLDL PIQGQRHKDVRNGLSVPPKLNVRNLSTMLSRPAWCARMLGTRRRTFGNIVGHAKGVSDTFAFAEWVSRQFDRSVTWDDVR WIKRHWGGRLIVKGILDADDARLAVAAGADAIVVSNHGGRQLDGAPSSISALPAIAAAVGRQTEVLMDGGIRSGQDVLRA LAWGAHGVMIGRAFLYGLGALGEAGVTRTLELIQKELESTMALCGITDVADVGRDAIVSPAHGAAPAWPEPVGRRVGESN LPVLAS >Mature_405_residues ADTITCVDDLQRLARRRVPKIFYDYVDSGSWTESTYRANETDLGSLRFRQRVGCNVEAIRTASTLLGHACSLPLALAPTG LAGMVHADGEILAARAAARFGVPFTLSTVSICSIEDVAEQVAQPFWFQLYMMKDRDFIVRLIERARDAGCSALVLTLDLP IQGQRHKDVRNGLSVPPKLNVRNLSTMLSRPAWCARMLGTRRRTFGNIVGHAKGVSDTFAFAEWVSRQFDRSVTWDDVRW IKRHWGGRLIVKGILDADDARLAVAAGADAIVVSNHGGRQLDGAPSSISALPAIAAAVGRQTEVLMDGGIRSGQDVLRAL AWGAHGVMIGRAFLYGLGALGEAGVTRTLELIQKELESTMALCGITDVADVGRDAIVSPAHGAAPAWPEPVGRRVGESNL PVLAS
Specific function: Unknown
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FMN hydroxy acid dehydrogenase domain [H]
Homologues:
Organism=Homo sapiens, GI11068137, Length=375, Percent_Identity=36, Blast_Score=251, Evalue=9e-67, Organism=Homo sapiens, GI54234014, Length=378, Percent_Identity=35.978835978836, Blast_Score=220, Evalue=2e-57, Organism=Homo sapiens, GI7705393, Length=378, Percent_Identity=35.978835978836, Blast_Score=220, Evalue=2e-57, Organism=Escherichia coli, GI1790033, Length=394, Percent_Identity=43.6548223350254, Blast_Score=327, Evalue=6e-91, Organism=Caenorhabditis elegans, GI193208036, Length=375, Percent_Identity=36.5333333333333, Blast_Score=234, Evalue=6e-62, Organism=Caenorhabditis elegans, GI32566217, Length=289, Percent_Identity=34.6020761245675, Blast_Score=165, Evalue=4e-41, Organism=Saccharomyces cerevisiae, GI6323587, Length=386, Percent_Identity=29.2746113989637, Blast_Score=174, Evalue=3e-44, Organism=Drosophila melanogaster, GI281363140, Length=384, Percent_Identity=38.28125, Blast_Score=251, Evalue=5e-67, Organism=Drosophila melanogaster, GI78707190, Length=384, Percent_Identity=38.28125, Blast_Score=251, Evalue=5e-67, Organism=Drosophila melanogaster, GI78707188, Length=381, Percent_Identity=38.3202099737533, Blast_Score=251, Evalue=6e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR012133 - InterPro: IPR000262 - InterPro: IPR008259 - InterPro: IPR020920 [H]
Pfam domain/function: PF01070 FMN_dh [H]
EC number: =1.1.2.3 [H]
Molecular weight: Translated: 43822; Mature: 43691
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: PS00557 FMN_HYDROXY_ACID_DH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTITCVDDLQRLARRRVPKIFYDYVDSGSWTESTYRANETDLGSLRFRQRVGCNVEAI CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHCCCHHHH RTASTLLGHACSLPLALAPTGLAGMVHADGEILAARAAARFGVPFTLSTVSICSIEDVAE HHHHHHHHHHHCCCCEECCCCCCEEEECCCHHHHHHHHHHCCCCEEECCEEHHHHHHHHH QVAQPFWFQLYMMKDRDFIVRLIERARDAGCSALVLTLDLPIQGQRHKDVRNGLSVPPKL HHCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCC NVRNLSTMLSRPAWCARMLGTRRRTFGNIVGHAKGVSDTFAFAEWVSRQFDRSVTWDDVR CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHH WIKRHWGGRLIVKGILDADDARLAVAAGADAIVVSNHGGRQLDGAPSSISALPAIAAAVG HHHHHCCCEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHC RQTEVLMDGGIRSGQDVLRALAWGAHGVMIGRAFLYGLGALGEAGVTRTLELIQKELEST CCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH MALCGITDVADVGRDAIVSPAHGAAPAWPEPVGRRVGESNLPVLAS HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEECC >Mature Secondary Structure ADTITCVDDLQRLARRRVPKIFYDYVDSGSWTESTYRANETDLGSLRFRQRVGCNVEAI CCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHCCCHHHH RTASTLLGHACSLPLALAPTGLAGMVHADGEILAARAAARFGVPFTLSTVSICSIEDVAE HHHHHHHHHHHCCCCEECCCCCCEEEECCCHHHHHHHHHHCCCCEEECCEEHHHHHHHHH QVAQPFWFQLYMMKDRDFIVRLIERARDAGCSALVLTLDLPIQGQRHKDVRNGLSVPPKL HHCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCC NVRNLSTMLSRPAWCARMLGTRRRTFGNIVGHAKGVSDTFAFAEWVSRQFDRSVTWDDVR CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHH WIKRHWGGRLIVKGILDADDARLAVAAGADAIVVSNHGGRQLDGAPSSISALPAIAAAVG HHHHHCCCEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHC RQTEVLMDGGIRSGQDVLRALAWGAHGVMIGRAFLYGLGALGEAGVTRTLELIQKELEST CCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH MALCGITDVADVGRDAIVSPAHGAAPAWPEPVGRRVGESNLPVLAS HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA