| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ybfB [H]
Identifier: 91782306
GI number: 91782306
Start: 1036697
End: 1037983
Strand: Direct
Name: ybfB [H]
Synonym: Bxe_A3527
Alternate gene names: 91782306
Gene position: 1036697-1037983 (Clockwise)
Preceding gene: 91782305
Following gene: 91782307
Centisome position: 21.18
GC content: 62.47
Gene sequence:
>1287_bases ATGTTGCATCGAAAAATCAGCCGCTGGTGGACGGCCGTCGCGGGGGCGCTCGGGGCGGCCACCGGCGGCGGGGTGATCGC GGTCTACGTGTTTGGCGTGTTTGCCAAACCGATCAGTGCGGAATTCGGCTGGTCGAGAGCGACGGTTTCGCTGGGGCTCA CCGTGTTTTCCATCGCCAACGGACTCGGCACGGTATTTCTCGGTGTCGCGATGGACCGCTGGGGCGTCAAGCGCACGACG ATGGCGATGATCCTGCTGTTCGGGGTGTCGCTCGCGTCGGTCTCTCTGCTGTCGCCCAATTTACCGGCTTATCTCGGCGT CTTTGCGGTAGTCGGATTCGCAGCCGCAGCGGCGACCATCATGCCTTATGCGTTGGTCGTGTCGGTATGGTTCGACCGCA CGCGCGGCTGGGTTCTGGGACTCATCAATGCCGGCACGGGTCTGGGCGGCGCTATCATGCCGTTCTACGCGAATTATCTG CTGGCCCATTTCGGCTGGCGTGGCGGCTATCTGGGCGTCGGTATCGCGGTAGCGGTCGTCCCACTGCTGGCGATGGCTTT TCTGGTCAGGCTGCCCGAGGGCTTTGAGGAGAACCGGCTGCGCGATCGTCTCGCTGCCGCGAAAACGGCCGTTCCGCTAC ATACGATCGTGCGCACCAGCCGGCATTTCTGGCTGCTTGCGCTCGCGATTTTCGGCATCTCGTTTGCGACGTACGGCATG CTTTCGCAACTCACGCCGATGATGCTCGACCGCGGTGTGACGCCGATCGTCGCAGCAGGCGTGATGTCTGCCGCCAGCAT CAGCTCAATCTGCTCGCGACTCGGCGCCGGCGCTTTCCTGGATCGGTTCTTCGCGCCGTACGTTACCGCGGTGATCTTCA TCCTCGCGGCGATCGGCATGTTGCTGGTGTCGGGCAGTCATTCGGTGCTGCTGCTGACTTGCGGCGCAGTGCTTCTCGGT CTCGGCCTCGGCGCGGAAGGCGACCTGCTGACCTACCTAGTGAGCCGCTATTTCTCGATCTACTCGTTCGGCTCGGTCAC CGGTGCGATCTGGCTGACGTTTGCATGGGGTGGCGCGTCGGGCATTTATCTTCTCAATCGATCGTTCGACGTGACCCATT CGTACAAGCCGGCGGCATACAGTTTCGTCGCAATCGTCGTGCTTGCCGCGATCGCGGTTTCCCGCCTCGGCCCATATCGT TTTCCGCCTGCGCATAAGGGTTCGCATGCAAGTTCCAGCGATAGCGAGCTAGGCGACGAGACGGCCGGCGCAGTATCCAG GCTTTAG
Upstream 100 bases:
>100_bases CTCGTGCCCGCGATGCCGGCGCCGGGAGTGGATCAGGCCGGCGTTATGGTCGGTATCCGTCACACCTTCTGAAAACGTGT GTTCCTTGAGGGAGCAGGGC
Downstream 100 bases:
>100_bases CACCGCAGCGATGGTCGTCGGACGTATTCCGAAGGCCATCGCACCGATTCAACCTCAAGACATCAAAGGAGTATTTCATG CTTGCTGAACAGCCGGGAAA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MLHRKISRWWTAVAGALGAATGGGVIAVYVFGVFAKPISAEFGWSRATVSLGLTVFSIANGLGTVFLGVAMDRWGVKRTT MAMILLFGVSLASVSLLSPNLPAYLGVFAVVGFAAAAATIMPYALVVSVWFDRTRGWVLGLINAGTGLGGAIMPFYANYL LAHFGWRGGYLGVGIAVAVVPLLAMAFLVRLPEGFEENRLRDRLAAAKTAVPLHTIVRTSRHFWLLALAIFGISFATYGM LSQLTPMMLDRGVTPIVAAGVMSAASISSICSRLGAGAFLDRFFAPYVTAVIFILAAIGMLLVSGSHSVLLLTCGAVLLG LGLGAEGDLLTYLVSRYFSIYSFGSVTGAIWLTFAWGGASGIYLLNRSFDVTHSYKPAAYSFVAIVVLAAIAVSRLGPYR FPPAHKGSHASSSDSELGDETAGAVSRL
Sequences:
>Translated_428_residues MLHRKISRWWTAVAGALGAATGGGVIAVYVFGVFAKPISAEFGWSRATVSLGLTVFSIANGLGTVFLGVAMDRWGVKRTT MAMILLFGVSLASVSLLSPNLPAYLGVFAVVGFAAAAATIMPYALVVSVWFDRTRGWVLGLINAGTGLGGAIMPFYANYL LAHFGWRGGYLGVGIAVAVVPLLAMAFLVRLPEGFEENRLRDRLAAAKTAVPLHTIVRTSRHFWLLALAIFGISFATYGM LSQLTPMMLDRGVTPIVAAGVMSAASISSICSRLGAGAFLDRFFAPYVTAVIFILAAIGMLLVSGSHSVLLLTCGAVLLG LGLGAEGDLLTYLVSRYFSIYSFGSVTGAIWLTFAWGGASGIYLLNRSFDVTHSYKPAAYSFVAIVVLAAIAVSRLGPYR FPPAHKGSHASSSDSELGDETAGAVSRL >Mature_428_residues MLHRKISRWWTAVAGALGAATGGGVIAVYVFGVFAKPISAEFGWSRATVSLGLTVFSIANGLGTVFLGVAMDRWGVKRTT MAMILLFGVSLASVSLLSPNLPAYLGVFAVVGFAAAAATIMPYALVVSVWFDRTRGWVLGLINAGTGLGGAIMPFYANYL LAHFGWRGGYLGVGIAVAVVPLLAMAFLVRLPEGFEENRLRDRLAAAKTAVPLHTIVRTSRHFWLLALAIFGISFATYGM LSQLTPMMLDRGVTPIVAAGVMSAASISSICSRLGAGAFLDRFFAPYVTAVIFILAAIGMLLVSGSHSVLLLTCGAVLLG LGLGAEGDLLTYLVSRYFSIYSFGSVTGAIWLTFAWGGASGIYLLNRSFDVTHSYKPAAYSFVAIVVLAAIAVSRLGPYR FPPAHKGSHASSSDSELGDETAGAVSRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 45028; Mature: 45028
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHRKISRWWTAVAGALGAATGGGVIAVYVFGVFAKPISAEFGWSRATVSLGLTVFSIAN CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH GLGTVFLGVAMDRWGVKRTTMAMILLFGVSLASVSLLSPNLPAYLGVFAVVGFAAAAATI HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH MPYALVVSVWFDRTRGWVLGLINAGTGLGGAIMPFYANYLLAHFGWRGGYLGVGIAVAVV HHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH PLLAMAFLVRLPEGFEENRLRDRLAAAKTAVPLHTIVRTSRHFWLLALAIFGISFATYGM HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSQLTPMMLDRGVTPIVAAGVMSAASISSICSRLGAGAFLDRFFAPYVTAVIFILAAIGM HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LLVSGSHSVLLLTCGAVLLGLGLGAEGDLLTYLVSRYFSIYSFGSVTGAIWLTFAWGGAS HHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC GIYLLNRSFDVTHSYKPAAYSFVAIVVLAAIAVSRLGPYRFPPAHKGSHASSSDSELGDE CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCH TAGAVSRL HHHHHHCC >Mature Secondary Structure MLHRKISRWWTAVAGALGAATGGGVIAVYVFGVFAKPISAEFGWSRATVSLGLTVFSIAN CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH GLGTVFLGVAMDRWGVKRTTMAMILLFGVSLASVSLLSPNLPAYLGVFAVVGFAAAAATI HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH MPYALVVSVWFDRTRGWVLGLINAGTGLGGAIMPFYANYLLAHFGWRGGYLGVGIAVAVV HHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH PLLAMAFLVRLPEGFEENRLRDRLAAAKTAVPLHTIVRTSRHFWLLALAIFGISFATYGM HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSQLTPMMLDRGVTPIVAAGVMSAASISSICSRLGAGAFLDRFFAPYVTAVIFILAAIGM HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LLVSGSHSVLLLTCGAVLLGLGLGAEGDLLTYLVSRYFSIYSFGSVTGAIWLTFAWGGAS HHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC GIYLLNRSFDVTHSYKPAAYSFVAIVVLAAIAVSRLGPYRFPPAHKGSHASSSDSELGDE CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCH TAGAVSRL HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]