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The map label for this gene is intD [C]

Identifier: 91782176

GI number: 91782176

Start: 892176

End: 893510

Strand: Direct

Name: intD [C]

Synonym: Bxe_A3658

Alternate gene names: 91782176

Gene position: 892176-893510 (Clockwise)

Preceding gene: 91782175

Following gene: 91782177

Centisome position: 18.22

GC content: 62.85

Gene sequence:

>1335_bases
ATGGCCAGAATCAACCTCACCCGCGAACTGCTCGACTCAATCCGCAAGAGCGGCTCAGACGGAAAGCACCGCGAACTCGC
CGACATCCAGAAGGGTTTCGGCGCGCGCATCACACCGAACGGCGCCATCAGCTTCTACTACCGCTACACCGGTTCCAACG
GCAGGCACCGCCGGCAGACCATCGGCGCGTATCCGGCGATGACGGTCTCCGAAGCACGCCGCCGCGCGCTGGAACTGACG
CAGGAAGTCGAGCATTCAAACGATACGGCAAGCGAGATCGTACGTAAACGCGAACGCGCGCACCGCACCGAACACGCCGC
GAAGGTCGTGCCGACGATCGACGGATTCATTGATGGCCACTACGGCAAGCGCCTGCGCGCAACCATCAAGACCGCGCCGA
GGACCATTACCGAACTGCGCAAGCTGGGTAAGGCTTTTCCTGGCACGCTGAACCGCATCAGTGTGCAGCAGGTGCTGGAG
TGGGCCTATGCGGAACTGGAAAAGGAGGTCGGTGAGGACCGCATCATGTGCCCGGCGTCGGTCCGGCGCAAGCTGACCTC
GCTGCGCGGACTATTCTCGCACGCGATCAGGCTCGACTTCATCACCGCAAATCCGGTCGCCGAGGTGATGGACGATAACA
AGGCGCTGTTCGACGAAGGCGAAGGTCGCGACCAGTGGCTGCGCCCGGACATGGAAATCCGGTTGCGTGCGGCGCTCGAT
GCACGTGAGGCGCGGCTGCGCAAGAGTCATGCGCAGATCGACTCAGATGCGCGCTGTGACATCGTCTATGGTCCCGATGC
TGCCTACGTCGATCATGTTAAGCCAGCGGTGCTGGTCGCGCTTGGCACCGGCCTGCGTCGCGGAGAACAGATGCAACTTC
AATGGCCCGACGTCGATTTTGACAACGAGCGTATCCGCGTTCGCAAGGCAACCAGCAAGGGCGACCGCACGCGCTATGTG
CCAATGTGCGACGAAGTCATCCAGGTGCTGAAGGCATGGAAGGCGCAGACCTGTAGCGGCCCGGTGCAGCCGATCCTGGT
GTTTGGTAACGCGCTCGGCGAAGTGCGCCGCGAAATCGGACCTTACCGGCACGTGCTGGCTGAAGCGAAGATCGACAGCT
TCACGTGGCATGACCTTCGCCACAGCTTCGCGACGCGCCTCGCCCAGCACGGCGTGCCAATCGAACGCATCGGCAAATGG
CTCGGACATAGCAGCCTCCAGCAGACGATGCGTTATGCGCACCACTGCCCGGAGCAGCAGCGTCACGACATCCGTGCGCT
GGACCGTGCGAGTGCAGCTGCCGCGACGGCGCATGCTGCACAGGTTGCCGCATAG

Upstream 100 bases:

>100_bases
CGTATAGCAGCGTGATACAGCGACGTTCAGCGTATCGCGCGCTCCCCACAAATTCCCCACGGCCACTGCCGTGGGGAAAT
ACTTTGACAGGGACACGCAC

Downstream 100 bases:

>100_bases
ACAGATAGCAGGATTTTTTCTCGAACTACCCCCGGCGCAGCGGGGGCGTTCTTTTCCCGCCGACACTGATTGCAACGTGT
TGCGTCAGATTGAGCAGGGA

Product: putative bacteriophage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MARINLTRELLDSIRKSGSDGKHRELADIQKGFGARITPNGAISFYYRYTGSNGRHRRQTIGAYPAMTVSEARRRALELT
QEVEHSNDTASEIVRKRERAHRTEHAAKVVPTIDGFIDGHYGKRLRATIKTAPRTITELRKLGKAFPGTLNRISVQQVLE
WAYAELEKEVGEDRIMCPASVRRKLTSLRGLFSHAIRLDFITANPVAEVMDDNKALFDEGEGRDQWLRPDMEIRLRAALD
AREARLRKSHAQIDSDARCDIVYGPDAAYVDHVKPAVLVALGTGLRRGEQMQLQWPDVDFDNERIRVRKATSKGDRTRYV
PMCDEVIQVLKAWKAQTCSGPVQPILVFGNALGEVRREIGPYRHVLAEAKIDSFTWHDLRHSFATRLAQHGVPIERIGKW
LGHSSLQQTMRYAHHCPEQQRHDIRALDRASAAAATAHAAQVAA

Sequences:

>Translated_444_residues
MARINLTRELLDSIRKSGSDGKHRELADIQKGFGARITPNGAISFYYRYTGSNGRHRRQTIGAYPAMTVSEARRRALELT
QEVEHSNDTASEIVRKRERAHRTEHAAKVVPTIDGFIDGHYGKRLRATIKTAPRTITELRKLGKAFPGTLNRISVQQVLE
WAYAELEKEVGEDRIMCPASVRRKLTSLRGLFSHAIRLDFITANPVAEVMDDNKALFDEGEGRDQWLRPDMEIRLRAALD
AREARLRKSHAQIDSDARCDIVYGPDAAYVDHVKPAVLVALGTGLRRGEQMQLQWPDVDFDNERIRVRKATSKGDRTRYV
PMCDEVIQVLKAWKAQTCSGPVQPILVFGNALGEVRREIGPYRHVLAEAKIDSFTWHDLRHSFATRLAQHGVPIERIGKW
LGHSSLQQTMRYAHHCPEQQRHDIRALDRASAAAATAHAAQVAA
>Mature_443_residues
ARINLTRELLDSIRKSGSDGKHRELADIQKGFGARITPNGAISFYYRYTGSNGRHRRQTIGAYPAMTVSEARRRALELTQ
EVEHSNDTASEIVRKRERAHRTEHAAKVVPTIDGFIDGHYGKRLRATIKTAPRTITELRKLGKAFPGTLNRISVQQVLEW
AYAELEKEVGEDRIMCPASVRRKLTSLRGLFSHAIRLDFITANPVAEVMDDNKALFDEGEGRDQWLRPDMEIRLRAALDA
REARLRKSHAQIDSDARCDIVYGPDAAYVDHVKPAVLVALGTGLRRGEQMQLQWPDVDFDNERIRVRKATSKGDRTRYVP
MCDEVIQVLKAWKAQTCSGPVQPILVFGNALGEVRREIGPYRHVLAEAKIDSFTWHDLRHSFATRLAQHGVPIERIGKWL
GHSSLQQTMRYAHHCPEQQRHDIRALDRASAAAATAHAAQVAA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 50135; Mature: 50003

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARINLTRELLDSIRKSGSDGKHRELADIQKGFGARITPNGAISFYYRYTGSNGRHRRQT
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECCCCCEEEEEEEECCCCCHHHHH
IGAYPAMTVSEARRRALELTQEVEHSNDTASEIVRKRERAHRTEHAAKVVPTIDGFIDGH
HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC
YGKRLRATIKTAPRTITELRKLGKAFPGTLNRISVQQVLEWAYAELEKEVGEDRIMCPAS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCHH
VRRKLTSLRGLFSHAIRLDFITANPVAEVMDDNKALFDEGEGRDQWLRPDMEIRLRAALD
HHHHHHHHHHHHHHHHEEEEEECCHHHHHHCCCCHHHCCCCCCCHHCCCCHHHHHHHHHH
AREARLRKSHAQIDSDARCDIVYGPDAAYVDHVKPAVLVALGTGLRRGEQMQLQWPDVDF
HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCCC
DNERIRVRKATSKGDRTRYVPMCDEVIQVLKAWKAQTCSGPVQPILVFGNALGEVRREIG
CCCEEEEEECCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
PYRHVLAEAKIDSFTWHDLRHSFATRLAQHGVPIERIGKWLGHSSLQQTMRYAHHCPEQQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHCCCHHH
RHDIRALDRASAAAATAHAAQVAA
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARINLTRELLDSIRKSGSDGKHRELADIQKGFGARITPNGAISFYYRYTGSNGRHRRQT
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECCCCCEEEEEEEECCCCCHHHHH
IGAYPAMTVSEARRRALELTQEVEHSNDTASEIVRKRERAHRTEHAAKVVPTIDGFIDGH
HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC
YGKRLRATIKTAPRTITELRKLGKAFPGTLNRISVQQVLEWAYAELEKEVGEDRIMCPAS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCHH
VRRKLTSLRGLFSHAIRLDFITANPVAEVMDDNKALFDEGEGRDQWLRPDMEIRLRAALD
HHHHHHHHHHHHHHHHEEEEEECCHHHHHHCCCCHHHCCCCCCCHHCCCCHHHHHHHHHH
AREARLRKSHAQIDSDARCDIVYGPDAAYVDHVKPAVLVALGTGLRRGEQMQLQWPDVDF
HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCCC
DNERIRVRKATSKGDRTRYVPMCDEVIQVLKAWKAQTCSGPVQPILVFGNALGEVRREIG
CCCEEEEEECCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
PYRHVLAEAKIDSFTWHDLRHSFATRLAQHGVPIERIGKWLGHSSLQQTMRYAHHCPEQQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHCCCHHH
RHDIRALDRASAAAATAHAAQVAA
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]