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The map label for this gene is rfbB [C]

Identifier: 91782114

GI number: 91782114

Start: 825598

End: 826752

Strand: Direct

Name: rfbB [C]

Synonym: Bxe_A3721

Alternate gene names: 91782114

Gene position: 825598-826752 (Clockwise)

Preceding gene: 91782113

Following gene: 91782115

Centisome position: 16.86

GC content: 58.7

Gene sequence:

>1155_bases
ATGAAAGTCCTCATTACGGGTGGCGCCGGCTTTATCGGCTCGAGTCTGGCGCGTAAGCTCTGCGCAAGCAATGCGGAAGT
GACGGTGCTCGATAATCTCTCGCCGCAGATTCACGGAGACAATCCGGATGTCACGTCCGCGATCTTTGCGTCGTTGCCGC
AAAGCGTGCACTTCGTGAAGGGATCGGTGACGGATCGGGCCATGCTCGAACGTGTGATGGAGGGGCAAGACGCGATCGTC
CATCTGGCGGCCGAGACAGGCACGGGACAATCCATGTACGAGGTCGACCGTTACGTCGATGTGAACGTGCATGGCACGGC
GCTGATTCTCGACATACTGGTCAAGAACAGCAGCAATACCGTGCGCAACGTGGTCGTCGCTTCGTCGCGAGCGATTTATG
GCGAGGGCAAGTACCGTTCTCCGGCCGCCGGCATTCTGTATCCCGGCCCGCGCAAGGAAAAAGACATGCTGGAGGGGCAA
TTCGAGCACCTCTGCCCGATTAGCGGCGAGCCGATGGAATGCGTGCCGACCGACGAGGAATCGAAAATCCATCCCACATC
GCTCTACGGCATTACCAAGCAGACTCAGGAACAGATGGTGATGACGACCTGCCGCTCCATCGGCATCGCTGCGTCGGCCT
TGCGTTATCAGAACGTCTATGGGCCGGGGCAGTCGCTGTCCAATCCCTACACCGGTATTCTTTCGATCTTTTCGACGCGC
ATCAAGAACGGCAATCCGATCAATATCTTCGAGGACGGCCTGGAAAGCCGTGACTTCGTTTATATCGACGACGTGGTCGC
CGCAACGTACTCCGCACTCACCAATCCCAATGCCGCGGACAACGTATTCGGCATCGGCTCGGGCGTGCGCACTTCGGTGA
TCGACGTTGCGCGGTCGCTGTGCGAGGCGTATGGCAGCAACGTCGACATCAGCGTAACGGGCGCCTTCCGCCTTGGCGAT
GTCCGCCATGTCTACGCTGACCTGGCGAGAGCAAGGGAAATGCTCGGCTTTGAGCCGAAAGTGTCGTTCAGCGAAGGCAT
CGCGAAGTTTGCCCAATGGGTCGACCAGCAGCAGGTAATGGCCGACACTTACGAGAAGAGTATTGCGGAGATGCGGGAGA
AAGGCCTGTACAAGGGCTGTGAACGGGCGGCATGA

Upstream 100 bases:

>100_bases
TGACTCGCGATGTTCCTGATTACTGCGTGGTCTCGGGAAATCCCGCGCGGATCATGAAGCGCTACAACTTCGAAACGCAA
TGCTGGGAAAGGGAGAAGCA

Downstream 100 bases:

>100_bases
CGCGCACGCTGTCCACGCCATGCATGACGGAGGCGCCGCCACGGCTGCCTTCGCAACTCATTTGAAGGACGCAATATGCC
GACGAGATATGGTTCGCCGC

Product: putative epimerase/dehydratase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKVLITGGAGFIGSSLARKLCASNAEVTVLDNLSPQIHGDNPDVTSAIFASLPQSVHFVKGSVTDRAMLERVMEGQDAIV
HLAAETGTGQSMYEVDRYVDVNVHGTALILDILVKNSSNTVRNVVVASSRAIYGEGKYRSPAAGILYPGPRKEKDMLEGQ
FEHLCPISGEPMECVPTDEESKIHPTSLYGITKQTQEQMVMTTCRSIGIAASALRYQNVYGPGQSLSNPYTGILSIFSTR
IKNGNPINIFEDGLESRDFVYIDDVVAATYSALTNPNAADNVFGIGSGVRTSVIDVARSLCEAYGSNVDISVTGAFRLGD
VRHVYADLARAREMLGFEPKVSFSEGIAKFAQWVDQQQVMADTYEKSIAEMREKGLYKGCERAA

Sequences:

>Translated_384_residues
MKVLITGGAGFIGSSLARKLCASNAEVTVLDNLSPQIHGDNPDVTSAIFASLPQSVHFVKGSVTDRAMLERVMEGQDAIV
HLAAETGTGQSMYEVDRYVDVNVHGTALILDILVKNSSNTVRNVVVASSRAIYGEGKYRSPAAGILYPGPRKEKDMLEGQ
FEHLCPISGEPMECVPTDEESKIHPTSLYGITKQTQEQMVMTTCRSIGIAASALRYQNVYGPGQSLSNPYTGILSIFSTR
IKNGNPINIFEDGLESRDFVYIDDVVAATYSALTNPNAADNVFGIGSGVRTSVIDVARSLCEAYGSNVDISVTGAFRLGD
VRHVYADLARAREMLGFEPKVSFSEGIAKFAQWVDQQQVMADTYEKSIAEMREKGLYKGCERAA
>Mature_384_residues
MKVLITGGAGFIGSSLARKLCASNAEVTVLDNLSPQIHGDNPDVTSAIFASLPQSVHFVKGSVTDRAMLERVMEGQDAIV
HLAAETGTGQSMYEVDRYVDVNVHGTALILDILVKNSSNTVRNVVVASSRAIYGEGKYRSPAAGILYPGPRKEKDMLEGQ
FEHLCPISGEPMECVPTDEESKIHPTSLYGITKQTQEQMVMTTCRSIGIAASALRYQNVYGPGQSLSNPYTGILSIFSTR
IKNGNPINIFEDGLESRDFVYIDDVVAATYSALTNPNAADNVFGIGSGVRTSVIDVARSLCEAYGSNVDISVTGAFRLGD
VRHVYADLARAREMLGFEPKVSFSEGIAKFAQWVDQQQVMADTYEKSIAEMREKGLYKGCERAA

Specific function: DTDP-L-RHAMNOSE BIOSYNTHESIS WITHIN THE O ANTIGEN BIOSYNTHESIS PATHWAY OF LIPOPOLYSACCHARIDE BIOSYNTHESIS. [C]

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI56237023, Length=380, Percent_Identity=25.5263157894737, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI56118217, Length=380, Percent_Identity=25.5263157894737, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI189083684, Length=380, Percent_Identity=25.5263157894737, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI42516563, Length=356, Percent_Identity=24.7191011235955, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1788353, Length=363, Percent_Identity=23.1404958677686, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786974, Length=373, Percent_Identity=24.6648793565684, Blast_Score=84, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319493, Length=378, Percent_Identity=24.0740740740741, Blast_Score=90, Evalue=7e-19,
Organism=Drosophila melanogaster, GI21356223, Length=366, Percent_Identity=24.0437158469945, Blast_Score=88, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 41573; Mature: 41573

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLITGGAGFIGSSLARKLCASNAEVTVLDNLSPQIHGDNPDVTSAIFASLPQSVHFVK
CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCHHHHHHC
GSVTDRAMLERVMEGQDAIVHLAAETGTGQSMYEVDRYVDVNVHGTALILDILVKNSSNT
CCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHEEEECCCCHHHEEEHHHCCCCCH
VRNVVVASSRAIYGEGKYRSPAAGILYPGPRKEKDMLEGQFEHLCPISGEPMECVPTDEE
HHHEEEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCCCCCCCCCCC
SKIHPTSLYGITKQTQEQMVMTTCRSIGIAASALRYQNVYGPGQSLSNPYTGILSIFSTR
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
IKNGNPINIFEDGLESRDFVYIDDVVAATYSALTNPNAADNVFGIGSGVRTSVIDVARSL
HCCCCCCCHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHH
CEAYGSNVDISVTGAFRLGDVRHVYADLARAREMLGFEPKVSFSEGIAKFAQWVDQQQVM
HHHCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ADTYEKSIAEMREKGLYKGCERAA
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVLITGGAGFIGSSLARKLCASNAEVTVLDNLSPQIHGDNPDVTSAIFASLPQSVHFVK
CEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCHHHHHHC
GSVTDRAMLERVMEGQDAIVHLAAETGTGQSMYEVDRYVDVNVHGTALILDILVKNSSNT
CCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHEEEECCCCHHHEEEHHHCCCCCH
VRNVVVASSRAIYGEGKYRSPAAGILYPGPRKEKDMLEGQFEHLCPISGEPMECVPTDEE
HHHEEEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCCCCCCCCCCC
SKIHPTSLYGITKQTQEQMVMTTCRSIGIAASALRYQNVYGPGQSLSNPYTGILSIFSTR
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
IKNGNPINIFEDGLESRDFVYIDDVVAATYSALTNPNAADNVFGIGSGVRTSVIDVARSL
HCCCCCCCHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHH
CEAYGSNVDISVTGAFRLGDVRHVYADLARAREMLGFEPKVSFSEGIAKFAQWVDQQQVM
HHHCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ADTYEKSIAEMREKGLYKGCERAA
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]