| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is dprE1 [H]
Identifier: 91782059
GI number: 91782059
Start: 766411
End: 767727
Strand: Reverse
Name: dprE1 [H]
Synonym: Bxe_A3785
Alternate gene names: 91782059
Gene position: 767727-766411 (Counterclockwise)
Preceding gene: 91782060
Following gene: 91782058
Centisome position: 15.68
GC content: 60.74
Gene sequence:
>1317_bases ATGAGTACTGTACTGTCCTGGGGACGTTACCCACATCTGCCGCAGGAAGTCCACGGCGTTGCATGGCGTGACTCCGCACA AGCCGCGTGGCTGGACGCGAGCCGCGAAAGCGGAACCACCCTCGCGTTCGGCAATGGCCGCAGTTATGGCGACAGTTGTC TCGCCGCCTCGGGCCATGTCGTGCAGACTCTAGCGCTCGACCGCCTGATTGCAGCGGACTGGCAAACCGGCGTGCTGCGC GCGGAACCTGGCGTGACACTCGAACAGATTCTCGATGTCGCCATTCCCCGCGGCTGGATGTTGCCGGTGACGCCTGGCAC CAAATACGCGACTTTGGGCGGCGCTATCGCCAACGATGTCCACGGCAAGAATCATCACGTGCGCGGCACCTTCGGCCGGC ACGTGCGCCGCTTTGCGCTCGCGCGCAGTGACGGCACGCAGTTTGAATGCTCACCCGACGAACAGCCTGAATTCTTCGCC GCAACAATTGGTGGACTCGGTCTCACCGGTTTGATCCTGTGGGCGGAGATTCAATTGATGCCGATCCGCTCGAGCATGAT CGCCATGAAGAGCATTCGCTTCACCAATCTCGACGAGTTCTTCGCACTATCCGAACGGCTCGACCCCCTGCACGAATACA GCGTTGCATGGGTTGATTGCCAAAGCCGCGGCTCGGCGCTCGGGCGCGGCATCTTCATGGTGGGCGACCATGCAACGGAG GGCCCGCTCGAAGTTGAACGCCGCACGAAGCGCATCGTCCCGTTTACGCTGCCGATTCCAGTGTTCAACCGCGTTACATT ACGTGCACTCAACGAGCTCTACTATCAGAAGCAACAAAGCGGCGAAGTCAGCGCAACGGTCAGTTACGACACCTACTTCT ACCCGCTGGACAGCTTGCTGGAATGGAACCGCATCTATGGCCGCGCGGGCTTTCAGCAGTATCAGTGCGTGGTGCCGCCG AGCTCGGCACGTGAAGCAACGCGCGAGATTCTCGACGCCATTTCCGAAAGCGGCACCGGCTCGTTTCTCGCGGTGATGAA ACGCTGCGGCGATTTGCGTTCGCCCGGTTTGTTATCCTTTCCGCGCGAAGGCACATCGCTCGCACTTGATTTCCCCCAGC GCGATGCGTTGAATACACGACTTTTCGCCAGACTCGATGCGATCGTGAGCGAAGCGGGTGGTCGCATCTACCCGGCCAAG GACGCGCACATGTCTGGCGCCGACTTTCGCACCGCCTACCCTCAATGGCATCAACTCGAAGCGCTGCGCGACCCTGCCCT GCTTTCGCGCTTCTGGGAACGGACTACTCGAACATGA
Upstream 100 bases:
>100_bases TCTGATGCACGACGACCCGATCGTTTTCGCGGCGCGCGATCGTGTCAGCCTCGCTGTCGTCGTGCTGTGCGGCCTGGTTT TCTGGGCGGCCATCTAATCG
Downstream 100 bases:
>100_bases AAAACATTCTTATCGTCGGCGCTACGTCGGCGATTGCCATTGCTTGTGCCCGCAAATGGGCTTCAGAAGGCGCACGCTTT TTTCTGGTGGCTCGCAATGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MSTVLSWGRYPHLPQEVHGVAWRDSAQAAWLDASRESGTTLAFGNGRSYGDSCLAASGHVVQTLALDRLIAADWQTGVLR AEPGVTLEQILDVAIPRGWMLPVTPGTKYATLGGAIANDVHGKNHHVRGTFGRHVRRFALARSDGTQFECSPDEQPEFFA ATIGGLGLTGLILWAEIQLMPIRSSMIAMKSIRFTNLDEFFALSERLDPLHEYSVAWVDCQSRGSALGRGIFMVGDHATE GPLEVERRTKRIVPFTLPIPVFNRVTLRALNELYYQKQQSGEVSATVSYDTYFYPLDSLLEWNRIYGRAGFQQYQCVVPP SSAREATREILDAISESGTGSFLAVMKRCGDLRSPGLLSFPREGTSLALDFPQRDALNTRLFARLDAIVSEAGGRIYPAK DAHMSGADFRTAYPQWHQLEALRDPALLSRFWERTTRT
Sequences:
>Translated_438_residues MSTVLSWGRYPHLPQEVHGVAWRDSAQAAWLDASRESGTTLAFGNGRSYGDSCLAASGHVVQTLALDRLIAADWQTGVLR AEPGVTLEQILDVAIPRGWMLPVTPGTKYATLGGAIANDVHGKNHHVRGTFGRHVRRFALARSDGTQFECSPDEQPEFFA ATIGGLGLTGLILWAEIQLMPIRSSMIAMKSIRFTNLDEFFALSERLDPLHEYSVAWVDCQSRGSALGRGIFMVGDHATE GPLEVERRTKRIVPFTLPIPVFNRVTLRALNELYYQKQQSGEVSATVSYDTYFYPLDSLLEWNRIYGRAGFQQYQCVVPP SSAREATREILDAISESGTGSFLAVMKRCGDLRSPGLLSFPREGTSLALDFPQRDALNTRLFARLDAIVSEAGGRIYPAK DAHMSGADFRTAYPQWHQLEALRDPALLSRFWERTTRT >Mature_437_residues STVLSWGRYPHLPQEVHGVAWRDSAQAAWLDASRESGTTLAFGNGRSYGDSCLAASGHVVQTLALDRLIAADWQTGVLRA EPGVTLEQILDVAIPRGWMLPVTPGTKYATLGGAIANDVHGKNHHVRGTFGRHVRRFALARSDGTQFECSPDEQPEFFAA TIGGLGLTGLILWAEIQLMPIRSSMIAMKSIRFTNLDEFFALSERLDPLHEYSVAWVDCQSRGSALGRGIFMVGDHATEG PLEVERRTKRIVPFTLPIPVFNRVTLRALNELYYQKQQSGEVSATVSYDTYFYPLDSLLEWNRIYGRAGFQQYQCVVPPS SAREATREILDAISESGTGSFLAVMKRCGDLRSPGLLSFPREGTSLALDFPQRDALNTRLFARLDAIVSEAGGRIYPAKD AHMSGADFRTAYPQWHQLEALRDPALLSRFWERTTRT
Specific function: Involved in the epimerization of decaprenylphosphoryl ribose (DPR) to decaprenylphosphoryl arabinose (DPA) a precursor for arabinan synthesis in mycobacterial cell wall biosynthesis. Probably catalyzes the oxidation at C-2 of decaprenylphosphoryl ribose (
COG id: COG0277
COG function: function code C; FAD/FMN-containing dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding PCMH-type domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007173 - InterPro: IPR016166 - InterPro: IPR016168 - InterPro: IPR006094 [H]
Pfam domain/function: PF04030 ALO; PF01565 FAD_binding_4 [H]
EC number: NA
Molecular weight: Translated: 48627; Mature: 48495
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVLSWGRYPHLPQEVHGVAWRDSAQAAWLDASRESGTTLAFGNGRSYGDSCLAASGHV CCCCCCCCCCCCCCHHHCCCEECCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHCCCHH VQTLALDRLIAADWQTGVLRAEPGVTLEQILDVAIPRGWMLPVTPGTKYATLGGAIANDV HHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCEEECCCCCCEEECCCHHHHCC HGKNHHVRGTFGRHVRRFALARSDGTQFECSPDEQPEFFAATIGGLGLTGLILWAEIQLM CCCCCEECCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEHHHHCCCHHHHHHEEHEEEEE PIRSSMIAMKSIRFTNLDEFFALSERLDPLHEYSVAWVDCQSRGSALGRGIFMVGDHATE ECHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCEEEEECCCCCCHHCCCEEEECCCCCC GPLEVERRTKRIVPFTLPIPVFNRVTLRALNELYYQKQQSGEVSATVSYDTYFYPLDSLL CCHHHHHHHCEECEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEECCHHHHH EWNRIYGRAGFQQYQCVVPPSSAREATREILDAISESGTGSFLAVMKRCGDLRSPGLLSF HHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCC PREGTSLALDFPQRDALNTRLFARLDAIVSEAGGRIYPAKDAHMSGADFRTAYPQWHQLE CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHH ALRDPALLSRFWERTTRT HHCCHHHHHHHHHHHCCC >Mature Secondary Structure STVLSWGRYPHLPQEVHGVAWRDSAQAAWLDASRESGTTLAFGNGRSYGDSCLAASGHV CCCCCCCCCCCCCHHHCCCEECCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHCCCHH VQTLALDRLIAADWQTGVLRAEPGVTLEQILDVAIPRGWMLPVTPGTKYATLGGAIANDV HHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCEEECCCCCCEEECCCHHHHCC HGKNHHVRGTFGRHVRRFALARSDGTQFECSPDEQPEFFAATIGGLGLTGLILWAEIQLM CCCCCEECCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEHHHHCCCHHHHHHEEHEEEEE PIRSSMIAMKSIRFTNLDEFFALSERLDPLHEYSVAWVDCQSRGSALGRGIFMVGDHATE ECHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCEEEEECCCCCCHHCCCEEEECCCCCC GPLEVERRTKRIVPFTLPIPVFNRVTLRALNELYYQKQQSGEVSATVSYDTYFYPLDSLL CCHHHHHHHCEECEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEECCHHHHH EWNRIYGRAGFQQYQCVVPPSSAREATREILDAISESGTGSFLAVMKRCGDLRSPGLLSF HHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCC PREGTSLALDFPQRDALNTRLFARLDAIVSEAGGRIYPAKDAHMSGADFRTAYPQWHQLE CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHH ALRDPALLSRFWERTTRT HHCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]