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The map label for this gene is yhjC [H]

Identifier: 91782009

GI number: 91782009

Start: 710567

End: 711556

Strand: Direct

Name: yhjC [H]

Synonym: Bxe_A3835

Alternate gene names: 91782009

Gene position: 710567-711556 (Clockwise)

Preceding gene: 91782007

Following gene: 91782012

Centisome position: 14.51

GC content: 63.03

Gene sequence:

>990_bases
ATGAATCTGCTGGAAGCCATGCGGATTTACGTCAGGGTGGTTGAGCGGGGCAATATCTCCAGCGCGGCAAGAGACCTCGA
TATCGGCCAGCCTGCTGCGAGCGAGCGTATCGACCGGCTCGAGAAGTACCTTGGCTGCCGGTTGCTGCTCCGCAGTGCGC
GCGCACTCAATTGCACGCCCGATGGCGTGACCTTCTACGAGCGCAGCAGGAGGATTCTGAACGCGGTGGAGCAGGCGGTC
GCCGAAGTGTCGAATGAAGAGCAGGCTCTCAGGGGAACGGTTCGCATCGCGGCGCCTCACTGCTTTGGCGAGACGGTCGT
GCCGCGGGCGCTGACCCTGGTTCGCGCGGCCTATCCCCAACTGGATCTCGAACTGATCCTGAACGACAGGACCGTCGATC
TCGCCACCGAAGGTGTGGACGCGTCCTTTCGTCTTGGGCAACTCGGAGAAGGAGCGTTCATTGCCTGTCAGCTCGGTCAG
GTTGGGCGCGTTCTCGTGGCGGCGCCGGAGTATCTGAGCCGGCATGGTCCGGTTGCGGCGCCGCCGGACCTGGTCAAGCA
CCCGTTCATCCGGCTTCAGGGCATGTTCGGTACGGACCAGCTGCCGCTCAGGCGCATGGAGAACGTCGTGGAGAGCGCGC
CGGTTCATACCGTGGTCAAAACCAGTCATTGGCGGCCCATGTATGAAATGATCGTCTCGGGCGCCGGCATTGGAGTGGTG
GAAGAACCCGCGTGCGTCGATGCGCTGACGGACGGCCGCCTCGTGCGCATACTGCCGCGATTCGATGCGCTCCCTTTCGA
TCTGCATGTGCTGACCCAGGCGCAACGTCCTGTGCCGGCACGGGTACGAATGGTTGTGACGATGCTGAAGACGTGCATTC
AGGAAATCCTGCTGGGCGTGCACGTCGATGGCAGAAGCGTGGCGAGCCGCCTCGAAGTACTGCCGGAGGACGAGGCGTCC
ACGCTCCTCAAGTCATCGTTGCGTGCGTGA

Upstream 100 bases:

>100_bases
CCGCGACACGCCAGGATTGGAGCCCAAGCATGGAAGACGCAAAACGGAAGCGAAGAACCCGAGCCTACCGGCAGATCGCC
GCAAAGGCAGGACAGACAAC

Downstream 100 bases:

>100_bases
GCCCGCAACGATGACGCGCACCTGGCTACCGGTTCTGGCCGGCAGCACTTGACCGGCAGAGCGTGCAGCCGGGTAAGGCC
ATCAAGGCCATCAAGGCCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MNLLEAMRIYVRVVERGNISSAARDLDIGQPAASERIDRLEKYLGCRLLLRSARALNCTPDGVTFYERSRRILNAVEQAV
AEVSNEEQALRGTVRIAAPHCFGETVVPRALTLVRAAYPQLDLELILNDRTVDLATEGVDASFRLGQLGEGAFIACQLGQ
VGRVLVAAPEYLSRHGPVAAPPDLVKHPFIRLQGMFGTDQLPLRRMENVVESAPVHTVVKTSHWRPMYEMIVSGAGIGVV
EEPACVDALTDGRLVRILPRFDALPFDLHVLTQAQRPVPARVRMVVTMLKTCIQEILLGVHVDGRSVASRLEVLPEDEAS
TLLKSSLRA

Sequences:

>Translated_329_residues
MNLLEAMRIYVRVVERGNISSAARDLDIGQPAASERIDRLEKYLGCRLLLRSARALNCTPDGVTFYERSRRILNAVEQAV
AEVSNEEQALRGTVRIAAPHCFGETVVPRALTLVRAAYPQLDLELILNDRTVDLATEGVDASFRLGQLGEGAFIACQLGQ
VGRVLVAAPEYLSRHGPVAAPPDLVKHPFIRLQGMFGTDQLPLRRMENVVESAPVHTVVKTSHWRPMYEMIVSGAGIGVV
EEPACVDALTDGRLVRILPRFDALPFDLHVLTQAQRPVPARVRMVVTMLKTCIQEILLGVHVDGRSVASRLEVLPEDEAS
TLLKSSLRA
>Mature_329_residues
MNLLEAMRIYVRVVERGNISSAARDLDIGQPAASERIDRLEKYLGCRLLLRSARALNCTPDGVTFYERSRRILNAVEQAV
AEVSNEEQALRGTVRIAAPHCFGETVVPRALTLVRAAYPQLDLELILNDRTVDLATEGVDASFRLGQLGEGAFIACQLGQ
VGRVLVAAPEYLSRHGPVAAPPDLVKHPFIRLQGMFGTDQLPLRRMENVVESAPVHTVVKTSHWRPMYEMIVSGAGIGVV
EEPACVDALTDGRLVRILPRFDALPFDLHVLTQAQRPVPARVRMVVTMLKTCIQEILLGVHVDGRSVASRLEVLPEDEAS
TLLKSSLRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=303, Percent_Identity=28.3828382838284, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=30.4054054054054, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=25.3378378378378, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=25.5892255892256, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789440, Length=259, Percent_Identity=27.027027027027, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787128, Length=179, Percent_Identity=29.0502793296089, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787589, Length=184, Percent_Identity=28.2608695652174, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788297, Length=134, Percent_Identity=33.5820895522388, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=24.5136186770428, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=25, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=129, Percent_Identity=35.6589147286822, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788706, Length=173, Percent_Identity=24.8554913294798, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36194; Mature: 36194

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLEAMRIYVRVVERGNISSAARDLDIGQPAASERIDRLEKYLGCRLLLRSARALNCTP
CCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DGVTFYERSRRILNAVEQAVAEVSNEEQALRGTVRIAAPHCFGETVVPRALTLVRAAYPQ
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHCCC
LDLELILNDRTVDLATEGVDASFRLGQLGEGAFIACQLGQVGRVLVAAPEYLSRHGPVAA
CCEEEEECCCEEEEEECCCCCCEECCCCCCCCEEEEECCCCCCEEEECCHHHHCCCCCCC
PPDLVKHPFIRLQGMFGTDQLPLRRMENVVESAPVHTVVKTSHWRPMYEMIVSGAGIGVV
CHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHCCCCCCCC
EEPACVDALTDGRLVRILPRFDALPFDLHVLTQAQRPVPARVRMVVTMLKTCIQEILLGV
CCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
HVDGRSVASRLEVLPEDEASTLLKSSLRA
CCCCHHHHHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNLLEAMRIYVRVVERGNISSAARDLDIGQPAASERIDRLEKYLGCRLLLRSARALNCTP
CCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DGVTFYERSRRILNAVEQAVAEVSNEEQALRGTVRIAAPHCFGETVVPRALTLVRAAYPQ
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHCCC
LDLELILNDRTVDLATEGVDASFRLGQLGEGAFIACQLGQVGRVLVAAPEYLSRHGPVAA
CCEEEEECCCEEEEEECCCCCCEECCCCCCCCEEEEECCCCCCEEEECCHHHHCCCCCCC
PPDLVKHPFIRLQGMFGTDQLPLRRMENVVESAPVHTVVKTSHWRPMYEMIVSGAGIGVV
CHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHCCCCCCCC
EEPACVDALTDGRLVRILPRFDALPFDLHVLTQAQRPVPARVRMVVTMLKTCIQEILLGV
CCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
HVDGRSVASRLEVLPEDEASTLLKSSLRA
CCCCHHHHHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]