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The map label for this gene is dgdR [H]

Identifier: 91781772

GI number: 91781772

Start: 428973

End: 429941

Strand: Reverse

Name: dgdR [H]

Synonym: Bxe_A4073

Alternate gene names: 91781772

Gene position: 429941-428973 (Counterclockwise)

Preceding gene: 91781782

Following gene: 91781771

Centisome position: 8.78

GC content: 64.81

Gene sequence:

>969_bases
ATGATCTGGAGGTATCCTACGGCTCGGCTTACCATCGGAAAAGCCGGAAATTCAGATCACTTCCATCGGATATACCGAAT
CATGAGCCAACGCGGATTCGACCTGACGCAGTTGCGGACCTTTGTCGCGGTCGCCGAATCGGGCAGCGTCTCGGCGGGTG
CGGAGCGCGTGTTCCTGTCCCAGTCTTCCGTCAGCGAACAGTTGAAGAAGCTCGAGGAGCGCGCCGGCCAGCCGCTCTTC
GTACGCAGCAAGCAGGGCGTCAGCGCCACGCACGCCGGCAGCCGTCTGCTCGATCATGCGCGACGCATCATCGCGATGAG
CGAAGCGGCTTTCGAAGACCTGCAAGGCCGCTCGCTCGACGGCGAGTTGCGCATCGCCATCACGGATTACTACCGTCCGC
ACGACATCGCACGCATTCTCAAAACGTTCTCGGAACAGCACCCGCGCCTGAAGCTGCACGTCACCGTGTTGCCGAGCGCG
GTGATCGACAGCAGTGCGGGCGACGACGCGTCGTTCGACATCGGCCTGTCGCTGCGCCTCGTCACGGGCAGCGCGCGCGG
CGCCGGCCGGCGCTCCGGTGCGCCAGGTATCGTGGTGCGGCGCGAAAAACTGCTGTGGGTCAGCGCAGCCGATTCGAGTC
CGCGGCCGGCCACGCCCTACCCGCTCGTGTTGCTGCCGTCGAGCTGCCAGTTGCAGCGTTTCGTCGTGAAGCTGCTCGAC
GAGCACAAGGTGCCGTATGTGGTGTCGCATTCCGCCTCCGGCGTGGCGGGCTTGCAACTCGCGCTGAAGGCCGGGCTCGG
CATTTCCTGTCTGAACGAATCGTCGATCGGCGGCGGCGTGGTGGCCTGTCCGGCGAGCGTGGGTTTGCCCGCGCTGCCCG
CCGTGGAGTTTCATCTGCTGCCTGGACGGATCGGCGAAAGCGAACGTGTGAGCAATGCTCGCACGGCCTTGATGCGGCTC
TTCAGTTGA

Upstream 100 bases:

>100_bases
GCGAACCCGACTCCGAGCACCTTCCACCGGTGGCTTGCCGGACGCCCGCCGGATAACCGCACGGCCGCCATTGATTCGTT
TCCCATCTCACCCTCCGCAA

Downstream 100 bases:

>100_bases
CCGCGACCGATCGCGCAGACGACAAGGTCCACACGATCTTGCCAAGGCCCGTGATCCATCATCAAACAATCACATTCGCG
CGATACCGTCGGCGAGCGAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MIWRYPTARLTIGKAGNSDHFHRIYRIMSQRGFDLTQLRTFVAVAESGSVSAGAERVFLSQSSVSEQLKKLEERAGQPLF
VRSKQGVSATHAGSRLLDHARRIIAMSEAAFEDLQGRSLDGELRIAITDYYRPHDIARILKTFSEQHPRLKLHVTVLPSA
VIDSSAGDDASFDIGLSLRLVTGSARGAGRRSGAPGIVVRREKLLWVSAADSSPRPATPYPLVLLPSSCQLQRFVVKLLD
EHKVPYVVSHSASGVAGLQLALKAGLGISCLNESSIGGGVVACPASVGLPALPAVEFHLLPGRIGESERVSNARTALMRL
FS

Sequences:

>Translated_322_residues
MIWRYPTARLTIGKAGNSDHFHRIYRIMSQRGFDLTQLRTFVAVAESGSVSAGAERVFLSQSSVSEQLKKLEERAGQPLF
VRSKQGVSATHAGSRLLDHARRIIAMSEAAFEDLQGRSLDGELRIAITDYYRPHDIARILKTFSEQHPRLKLHVTVLPSA
VIDSSAGDDASFDIGLSLRLVTGSARGAGRRSGAPGIVVRREKLLWVSAADSSPRPATPYPLVLLPSSCQLQRFVVKLLD
EHKVPYVVSHSASGVAGLQLALKAGLGISCLNESSIGGGVVACPASVGLPALPAVEFHLLPGRIGESERVSNARTALMRL
FS
>Mature_322_residues
MIWRYPTARLTIGKAGNSDHFHRIYRIMSQRGFDLTQLRTFVAVAESGSVSAGAERVFLSQSSVSEQLKKLEERAGQPLF
VRSKQGVSATHAGSRLLDHARRIIAMSEAAFEDLQGRSLDGELRIAITDYYRPHDIARILKTFSEQHPRLKLHVTVLPSA
VIDSSAGDDASFDIGLSLRLVTGSARGAGRRSGAPGIVVRREKLLWVSAADSSPRPATPYPLVLLPSSCQLQRFVVKLLD
EHKVPYVVSHSASGVAGLQLALKAGLGISCLNESSIGGGVVACPASVGLPALPAVEFHLLPGRIGESERVSNARTALMRL
FS

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=268, Percent_Identity=28.7313432835821, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786713, Length=207, Percent_Identity=34.2995169082126, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787806, Length=182, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1790208, Length=132, Percent_Identity=35.6060606060606, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=120, Percent_Identity=31.6666666666667, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34723; Mature: 34723

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWRYPTARLTIGKAGNSDHFHRIYRIMSQRGFDLTQLRTFVAVAESGSVSAGAERVFLS
CCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEC
QSSVSEQLKKLEERAGQPLFVRSKQGVSATHAGSRLLDHARRIIAMSEAAFEDLQGRSLD
HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GELRIAITDYYRPHDIARILKTFSEQHPRLKLHVTVLPSAVIDSSAGDDASFDIGLSLRL
CEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCCCEEEEEEEEE
VTGSARGAGRRSGAPGIVVRREKLLWVSAADSSPRPATPYPLVLLPSSCQLQRFVVKLLD
EECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHH
EHKVPYVVSHSASGVAGLQLALKAGLGISCLNESSIGGGVVACPASVGLPALPAVEFHLL
CCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEC
PGRIGESERVSNARTALMRLFS
CCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIWRYPTARLTIGKAGNSDHFHRIYRIMSQRGFDLTQLRTFVAVAESGSVSAGAERVFLS
CCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEC
QSSVSEQLKKLEERAGQPLFVRSKQGVSATHAGSRLLDHARRIIAMSEAAFEDLQGRSLD
HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GELRIAITDYYRPHDIARILKTFSEQHPRLKLHVTVLPSAVIDSSAGDDASFDIGLSLRL
CEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCCCEEEEEEEEE
VTGSARGAGRRSGAPGIVVRREKLLWVSAADSSPRPATPYPLVLLPSSCQLQRFVVKLLD
EECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHH
EHKVPYVVSHSASGVAGLQLALKAGLGISCLNESSIGGGVVACPASVGLPALPAVEFHLL
CCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEC
PGRIGESERVSNARTALMRLFS
CCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]