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The map label for this gene is yfdE [H]

Identifier: 91781761

GI number: 91781761

Start: 417446

End: 418636

Strand: Direct

Name: yfdE [H]

Synonym: Bxe_A4084

Alternate gene names: 91781761

Gene position: 417446-418636 (Clockwise)

Preceding gene: 91781760

Following gene: 91781762

Centisome position: 8.53

GC content: 64.15

Gene sequence:

>1191_bases
ATGAGTTTGCCTCTTTCGGGTGTGCGGGTGCTCGCCATCGAACAATATGGCGCCGGGCCGTTCGCGACCCAGCATCTCGC
GGACCTCGGCGCGGAGATCATCAAGATCGAGCATCCGACCAACGGCGGCGACGTCGGCCGCGCAGTCGGCCCGTATTTTT
TCGGCGACGGCGATAGCCACTTTTTCGAAGCGTTCAATCGCAACAAATGCAGTCTCACGCTCGACCTGAAGAAGCCCGAA
GCGCGCGCAGTACTGCTCGACCTCGTCGCGAAGAGCGATGCGGTGTTCAACAATCTGCGCGGCGATTTGCCGGCGAAACT
CGGGCTCACTTACGAGCAACTGTGCGAGGCGAATCCGAAGATCGTGTGCGGGCATCTGTCCGCGTATGGTCGCACCGGCA
GCCGGGCGGCATGGCCTGGCTACGACTATCTGATGCAGGCCGAAGCCGGCTATCTGTCGGTCACGGGCGAGCCCGACAGT
CCGCCGGCGCGCTTCGGCCTGTCGATCATCGATCTGATGACCGGCACGACTGCGGCGATGGCGCTGCTCGCCGGACTCGT
CGATGCGAAGACCTCGGGCAAGGGACGTGACATCGACGTGAGTCTCTTCGACGTCGCGCTGCATAACCTCGCGTATGTCG
CGACGTGGTATCTGAACGGCGGCGTAGTGACGGGGCGCGAGAACCGCTCCTCGCATCCGTCGCTCACGCCGAGCCAGTTG
TACAAAACGCAGGACGGCTGGATTTTCCTGATGTGCAACAAGGAAAAGTTCTGGGGCGTGCTTGCCGAGGTGCTCGATAA
ACCGTCCTGGGTGACCGATCCGCGCTTTTGCAACTTCCAGGCGCGTCTCGCGAATCGCGAGCTCGTGCAGACCGAGCTCG
ACGCGGTGCTCTCCGGCGCCACCACCGCGCAATGGCTCGAACGCTTCGGCGGCCGCGTGCCGGCCGCGCCGGTGTTCAAC
GTCAAGGAGGCGCTGGAGAATCCCTTCGTGGCAGAGCGCGAATGCGTGGTGAACGCTGTACATCCGCGTTTCGGCACGGT
ACGCGGCGTGGCCGCGCCGGTGCGGATCGACGAACCCTTGCCGACGCGCGCGGCGCCGGACCTCGGGCAGGACACGCAGC
GTCTGCTCGACGAGCTGGGCTACGGTGCGGAAAGGATCGCTTTGCTGAGAGAGGCGGGTGTGGTGCAATAA

Upstream 100 bases:

>100_bases
AGCGGCTGTATCGCGATGCGCCGCTCCTCACCATCGGCGAAGGCACCAACGAGATGCAGCGCATCATCATCGCGAAGCAG
CTGATCGAACGGAGTCCGGT

Downstream 100 bases:

>100_bases
GGCCGGGCGGGCAACCGTCCGCTCTTCCACTTTTTTGCACACCAAGATGGCCACGACAGTCCTCGGGCAACAGCCGCGCT
ACATGCAACTGGCACAAACG

Product: putative L-carnitine dehydratase/bile acid- inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSLPLSGVRVLAIEQYGAGPFATQHLADLGAEIIKIEHPTNGGDVGRAVGPYFFGDGDSHFFEAFNRNKCSLTLDLKKPE
ARAVLLDLVAKSDAVFNNLRGDLPAKLGLTYEQLCEANPKIVCGHLSAYGRTGSRAAWPGYDYLMQAEAGYLSVTGEPDS
PPARFGLSIIDLMTGTTAAMALLAGLVDAKTSGKGRDIDVSLFDVALHNLAYVATWYLNGGVVTGRENRSSHPSLTPSQL
YKTQDGWIFLMCNKEKFWGVLAEVLDKPSWVTDPRFCNFQARLANRELVQTELDAVLSGATTAQWLERFGGRVPAAPVFN
VKEALENPFVAERECVVNAVHPRFGTVRGVAAPVRIDEPLPTRAAPDLGQDTQRLLDELGYGAERIALLREAGVVQ

Sequences:

>Translated_396_residues
MSLPLSGVRVLAIEQYGAGPFATQHLADLGAEIIKIEHPTNGGDVGRAVGPYFFGDGDSHFFEAFNRNKCSLTLDLKKPE
ARAVLLDLVAKSDAVFNNLRGDLPAKLGLTYEQLCEANPKIVCGHLSAYGRTGSRAAWPGYDYLMQAEAGYLSVTGEPDS
PPARFGLSIIDLMTGTTAAMALLAGLVDAKTSGKGRDIDVSLFDVALHNLAYVATWYLNGGVVTGRENRSSHPSLTPSQL
YKTQDGWIFLMCNKEKFWGVLAEVLDKPSWVTDPRFCNFQARLANRELVQTELDAVLSGATTAQWLERFGGRVPAAPVFN
VKEALENPFVAERECVVNAVHPRFGTVRGVAAPVRIDEPLPTRAAPDLGQDTQRLLDELGYGAERIALLREAGVVQ
>Mature_395_residues
SLPLSGVRVLAIEQYGAGPFATQHLADLGAEIIKIEHPTNGGDVGRAVGPYFFGDGDSHFFEAFNRNKCSLTLDLKKPEA
RAVLLDLVAKSDAVFNNLRGDLPAKLGLTYEQLCEANPKIVCGHLSAYGRTGSRAAWPGYDYLMQAEAGYLSVTGEPDSP
PARFGLSIIDLMTGTTAAMALLAGLVDAKTSGKGRDIDVSLFDVALHNLAYVATWYLNGGVVTGRENRSSHPSLTPSQLY
KTQDGWIFLMCNKEKFWGVLAEVLDKPSWVTDPRFCNFQARLANRELVQTELDAVLSGATTAQWLERFGGRVPAAPVFNV
KEALENPFVAERECVVNAVHPRFGTVRGVAAPVRIDEPLPTRAAPDLGQDTQRLLDELGYGAERIALLREAGVVQ

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=397, Percent_Identity=34.2569269521411, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=32.1513002364066, Blast_Score=192, Evalue=4e-49,
Organism=Homo sapiens, GI13376042, Length=422, Percent_Identity=29.1469194312796, Blast_Score=162, Evalue=5e-40,
Organism=Homo sapiens, GI300863126, Length=397, Percent_Identity=30.7304785894207, Blast_Score=155, Evalue=9e-38,
Organism=Homo sapiens, GI266456254, Length=407, Percent_Identity=25.5528255528256, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI42794625, Length=407, Percent_Identity=25.5528255528256, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458393, Length=203, Percent_Identity=30.5418719211823, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458397, Length=215, Percent_Identity=29.7674418604651, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI42822893, Length=158, Percent_Identity=31.0126582278481, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI266458395, Length=158, Percent_Identity=31.0126582278481, Blast_Score=76, Evalue=7e-14,
Organism=Escherichia coli, GI87082093, Length=381, Percent_Identity=30.7086614173228, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=27.4038461538462, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1786222, Length=404, Percent_Identity=30.1980198019802, Blast_Score=135, Evalue=6e-33,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=34.9246231155779, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24585488, Length=408, Percent_Identity=26.7156862745098, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42932; Mature: 42801

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPLSGVRVLAIEQYGAGPFATQHLADLGAEIIKIEHPTNGGDVGRAVGPYFFGDGDSH
CCCCCCCEEEEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCEECCCCHH
FFEAFNRNKCSLTLDLKKPEARAVLLDLVAKSDAVFNNLRGDLPAKLGLTYEQLCEANPK
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCC
IVCGHLSAYGRTGSRAAWPGYDYLMQAEAGYLSVTGEPDSPPARFGLSIIDLMTGTTAAM
EEEEEHHHCCCCCCCCCCCCHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHH
ALLAGLVDAKTSGKGRDIDVSLFDVALHNLAYVATWYLNGGVVTGRENRSSHPSLTPSQL
HHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHEEEEEEECCCEEECCCCCCCCCCCCHHHH
YKTQDGWIFLMCNKEKFWGVLAEVLDKPSWVTDPRFCNFQARLANRELVQTELDAVLSGA
HCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCC
TTAQWLERFGGRVPAAPVFNVKEALENPFVAERECVVNAVHPRFGTVRGVAAPVRIDEPL
HHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHEECCCCCCCCCCCCCCEEECCCC
PTRAAPDLGQDTQRLLDELGYGAERIALLREAGVVQ
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SLPLSGVRVLAIEQYGAGPFATQHLADLGAEIIKIEHPTNGGDVGRAVGPYFFGDGDSH
CCCCCCEEEEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCEECCCCHH
FFEAFNRNKCSLTLDLKKPEARAVLLDLVAKSDAVFNNLRGDLPAKLGLTYEQLCEANPK
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCC
IVCGHLSAYGRTGSRAAWPGYDYLMQAEAGYLSVTGEPDSPPARFGLSIIDLMTGTTAAM
EEEEEHHHCCCCCCCCCCCCHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHH
ALLAGLVDAKTSGKGRDIDVSLFDVALHNLAYVATWYLNGGVVTGRENRSSHPSLTPSQL
HHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHEEEEEEECCCEEECCCCCCCCCCCCHHHH
YKTQDGWIFLMCNKEKFWGVLAEVLDKPSWVTDPRFCNFQARLANRELVQTELDAVLSGA
HCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCC
TTAQWLERFGGRVPAAPVFNVKEALENPFVAERECVVNAVHPRFGTVRGVAAPVRIDEPL
HHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHEECCCCCCCCCCCCCCEEECCCC
PTRAAPDLGQDTQRLLDELGYGAERIALLREAGVVQ
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]