| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91781750
Identifier: 91781750
GI number: 91781750
Start: 404763
End: 406547
Strand: Reverse
Name: 91781750
Synonym: Bxe_A4095
Alternate gene names: NA
Gene position: 406547-404763 (Counterclockwise)
Preceding gene: 91781751
Following gene: 91781749
Centisome position: 8.3
GC content: 61.46
Gene sequence:
>1785_bases ATGGCGAATATCAGTCAACCCAAAGTGGACGCGGTAGTCGTTGGCATGGGCTGGTCCGGCTCGATCATGGCGATCGAACT GGCGGACGCCGGCCTTACCGTGGTCGGCCTCGAGCGCGGCGAGAACCGCGACACCTATCCTGACTTCGCGTATCCGAAGA TCGCTGACGAACTGACCTACGTGCAGCGTTACAAGCTGATGCAAAGCCTCGCGCACGAGACCGTGACGATCCGCCGCCAG GCGAACGAGGTCGCGTTGCCGCTGCGCCAGTACGGCGCATTTCTGTTCGGCGACGGCGTGGGCGGCTCGGGCGTGCATTG GAACGGCTTCACCTATCGCGCAACCGACGCCGACCTGAAACTGCGCAGCCATTACGAGCAACGCTACGGCAAGCAGTTCA TTCCCGACGACATGACGATTCAGGACTGGCCGGTCAGCGCGGCCGAGCTCGAACCGTTCTACGACCGCTTCGAGTACGTC GCGGGCACCTCGGGCAGGGCGGGCAACCTCAATGGCCGGCCAATCAGCGGCGGTAACCCGTTCGAGGCGCCACGCTCGCG CGACTACGCGTTGCCGCCGTTGCCCACCGCGTATCCGTCGATGCTGTTCGAGCAGGCCGCGCGTGAAGTCGGCTATCACC CGTATCCAACGCCCGCGTCGATTGCATCCAAAGCCTATAAGAACCCATATGGCATGCAGTTAGGGCCGTGCAACTTCTGC GGCTATTGCGAGCTGTTCGGCTGCTACATGTTTTCGAAAGCGTCGCCGCAAACGTGCATTCTTCCGGCGCTCGCGAGAAA GCCCAATTTCGAATTGCGCGAGCGCTCGGCGGTCATCAAGGTCAATCTCGACCCGACCGGCAAGCGCGCAACCGGCGTCA CCTACATCGACGCGCAGGGACGCACGGTCGAGCAGCCGGCGGATATCGTCGCGCTCTGTGCTTACCAGATGCACAACGTG CGCCTGCTCCTGCTATCGGGTATCGGCAAGCCGTACGATCCCGCTACCGGCGAAGGCACCGTCGGCAAAAACTACGCTTA TCAGAAGAACAGCAAGATTCCCGTCTTCTTCGACAAGGACGTCGCGATCAATCCGTTCATCGGTTCGGGATCGGGCGGTG TGGTCTATGACGATTTCAATGCGGACAACTTCGATCACGGTCCGGTGAATTTCATTGGCGGTGCGATCACGTTTGCAACC GTAACGGGCGGCCGCCCGATTGCGCAGGCGCTGGTGCCGCCCGGCACGCCGAAGTGGGGATCAGGCTGGAAGAAGGCAGT GAAGGATCACTATCTGCATTCGTTCGCCATCTCCACGCAAGGCTCCGTGATGTCGTACCGCGACAACTACCTCGATCTCG ATCCGACCTACAAGGATGCGTACGGGCTGCCGTTATTGCGCATGACCTTCGACTGGAAAGACAACGAGGGCCGCATGACG CAGTTCGTCAGCCACAAGGCCGCCGAAGTCGCGCGCGCGATGAACCCGAAGCCGGCATCGGTTGCCATCAATGCGGGCAA GCCGGGCGATCACTTCGACGTCGGCCCGTATCAGAGCACGCATACGACCGGCGGCGCGATCGCGGGCGACCGGCCGGATA ACAGCGTGGTCAACAAATATCTCCAGTCCTGGGATGTTCCGAACGTATTCGTGGCGGGCGCCTGTTCATTTCCGCAAAAT CTCGGCATCAATCCGACCGGCACGATCGGCGCAATGACGTACTACGCGGCGAAAGCGATTCGCGAGACCTATCTGAAGAA TCCCGGCCCGCTGGTCGAGGCATGA
Upstream 100 bases:
>100_bases CCCGCTCGGTCCCGCGACGATAGAAGGCAAAACATAGCGTGATCCTTATCTAACCGGTTTCAGCGCAGCACCACATAAAA CACACGCCAGGAGGAGACAC
Downstream 100 bases:
>100_bases GCGGCCATCATGAACATGATTCCCGACCGCTTGAAGCAATACCTGATACCCGTGTTTGCGCTGATCTGCAGCGGCACGCC CGGCGCTGCGAACGCGCAGG
Product: putative gluconate dehydrogenase
Products: NA
Alternate protein names: GA 2-DH dehydrogenase subunit; GADH dehydrogenase subunit [H]
Number of amino acids: Translated: 594; Mature: 593
Protein sequence:
>594_residues MANISQPKVDAVVVGMGWSGSIMAIELADAGLTVVGLERGENRDTYPDFAYPKIADELTYVQRYKLMQSLAHETVTIRRQ ANEVALPLRQYGAFLFGDGVGGSGVHWNGFTYRATDADLKLRSHYEQRYGKQFIPDDMTIQDWPVSAAELEPFYDRFEYV AGTSGRAGNLNGRPISGGNPFEAPRSRDYALPPLPTAYPSMLFEQAAREVGYHPYPTPASIASKAYKNPYGMQLGPCNFC GYCELFGCYMFSKASPQTCILPALARKPNFELRERSAVIKVNLDPTGKRATGVTYIDAQGRTVEQPADIVALCAYQMHNV RLLLLSGIGKPYDPATGEGTVGKNYAYQKNSKIPVFFDKDVAINPFIGSGSGGVVYDDFNADNFDHGPVNFIGGAITFAT VTGGRPIAQALVPPGTPKWGSGWKKAVKDHYLHSFAISTQGSVMSYRDNYLDLDPTYKDAYGLPLLRMTFDWKDNEGRMT QFVSHKAAEVARAMNPKPASVAINAGKPGDHFDVGPYQSTHTTGGAIAGDRPDNSVVNKYLQSWDVPNVFVAGACSFPQN LGINPTGTIGAMTYYAAKAIRETYLKNPGPLVEA
Sequences:
>Translated_594_residues MANISQPKVDAVVVGMGWSGSIMAIELADAGLTVVGLERGENRDTYPDFAYPKIADELTYVQRYKLMQSLAHETVTIRRQ ANEVALPLRQYGAFLFGDGVGGSGVHWNGFTYRATDADLKLRSHYEQRYGKQFIPDDMTIQDWPVSAAELEPFYDRFEYV AGTSGRAGNLNGRPISGGNPFEAPRSRDYALPPLPTAYPSMLFEQAAREVGYHPYPTPASIASKAYKNPYGMQLGPCNFC GYCELFGCYMFSKASPQTCILPALARKPNFELRERSAVIKVNLDPTGKRATGVTYIDAQGRTVEQPADIVALCAYQMHNV RLLLLSGIGKPYDPATGEGTVGKNYAYQKNSKIPVFFDKDVAINPFIGSGSGGVVYDDFNADNFDHGPVNFIGGAITFAT VTGGRPIAQALVPPGTPKWGSGWKKAVKDHYLHSFAISTQGSVMSYRDNYLDLDPTYKDAYGLPLLRMTFDWKDNEGRMT QFVSHKAAEVARAMNPKPASVAINAGKPGDHFDVGPYQSTHTTGGAIAGDRPDNSVVNKYLQSWDVPNVFVAGACSFPQN LGINPTGTIGAMTYYAAKAIRETYLKNPGPLVEA >Mature_593_residues ANISQPKVDAVVVGMGWSGSIMAIELADAGLTVVGLERGENRDTYPDFAYPKIADELTYVQRYKLMQSLAHETVTIRRQA NEVALPLRQYGAFLFGDGVGGSGVHWNGFTYRATDADLKLRSHYEQRYGKQFIPDDMTIQDWPVSAAELEPFYDRFEYVA GTSGRAGNLNGRPISGGNPFEAPRSRDYALPPLPTAYPSMLFEQAAREVGYHPYPTPASIASKAYKNPYGMQLGPCNFCG YCELFGCYMFSKASPQTCILPALARKPNFELRERSAVIKVNLDPTGKRATGVTYIDAQGRTVEQPADIVALCAYQMHNVR LLLLSGIGKPYDPATGEGTVGKNYAYQKNSKIPVFFDKDVAINPFIGSGSGGVVYDDFNADNFDHGPVNFIGGAITFATV TGGRPIAQALVPPGTPKWGSGWKKAVKDHYLHSFAISTQGSVMSYRDNYLDLDPTYKDAYGLPLLRMTFDWKDNEGRMTQ FVSHKAAEVARAMNPKPASVAINAGKPGDHFDVGPYQSTHTTGGAIAGDRPDNSVVNKYLQSWDVPNVFVAGACSFPQNL GINPTGTIGAMTYYAAKAIRETYLKNPGPLVEA
Specific function: Part of the heterotrimer that catalyzes the conversion of D-gluconate to 2-dehydro-D-gluconate. This subunit functions as the dehydrogenase [H]
COG id: COG2303
COG function: function code E; Choline dehydrogenase and related flavoproteins
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GMC oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000172 - InterPro: IPR007867 [H]
Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]
EC number: =1.1.99.3 [H]
Molecular weight: Translated: 64796; Mature: 64665
Theoretical pI: Translated: 7.30; Mature: 7.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANISQPKVDAVVVGMGWSGSIMAIELADAGLTVVGLERGENRDTYPDFAYPKIADELTY CCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH VQRYKLMQSLAHETVTIRRQANEVALPLRQYGAFLFGDGVGGSGVHWNGFTYRATDADLK HHHHHHHHHHHHHHEEEEECCCHHCCCHHHCCCEEEECCCCCCCEEECCEEEEECCCCHH LRSHYEQRYGKQFIPDDMTIQDWPVSAAELEPFYDRFEYVAGTSGRAGNLNGRPISGGNP HHHHHHHHHCCCCCCCCCEECCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC FEAPRSRDYALPPLPTAYPSMLFEQAAREVGYHPYPTPASIASKAYKNPYGMQLGPCNFC CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEECCCCCC GYCELFGCYMFSKASPQTCILPALARKPNFELRERSAVIKVNLDPTGKRATGVTYIDAQG CHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCEECCCEEEEEECCCCCCCCCCEEEECCCC RTVEQPADIVALCAYQMHNVRLLLLSGIGKPYDPATGEGTVGKNYAYQKNSKIPVFFDKD CCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCC VAINPFIGSGSGGVVYDDFNADNFDHGPVNFIGGAITFATVTGGRPIAQALVPPGTPKWG CEECCEECCCCCCEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCHHHHHCCCCCCCCCC SGWKKAVKDHYLHSFAISTQGSVMSYRDNYLDLDPTYKDAYGLPLLRMTFDWKDNEGRMT CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCCHHCCCEEEEEEEEEECCCCHHH QFVSHKAAEVARAMNPKPASVAINAGKPGDHFDVGPYQSTHTTGGAIAGDRPDNSVVNKY HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LQSWDVPNVFVAGACSFPQNLGINPTGTIGAMTYYAAKAIRETYLKNPGPLVEA HHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure ANISQPKVDAVVVGMGWSGSIMAIELADAGLTVVGLERGENRDTYPDFAYPKIADELTY CCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH VQRYKLMQSLAHETVTIRRQANEVALPLRQYGAFLFGDGVGGSGVHWNGFTYRATDADLK HHHHHHHHHHHHHHEEEEECCCHHCCCHHHCCCEEEECCCCCCCEEECCEEEEECCCCHH LRSHYEQRYGKQFIPDDMTIQDWPVSAAELEPFYDRFEYVAGTSGRAGNLNGRPISGGNP HHHHHHHHHCCCCCCCCCEECCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC FEAPRSRDYALPPLPTAYPSMLFEQAAREVGYHPYPTPASIASKAYKNPYGMQLGPCNFC CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEECCCCCC GYCELFGCYMFSKASPQTCILPALARKPNFELRERSAVIKVNLDPTGKRATGVTYIDAQG CHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCEECCCEEEEEECCCCCCCCCCEEEECCCC RTVEQPADIVALCAYQMHNVRLLLLSGIGKPYDPATGEGTVGKNYAYQKNSKIPVFFDKD CCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCC VAINPFIGSGSGGVVYDDFNADNFDHGPVNFIGGAITFATVTGGRPIAQALVPPGTPKWG CEECCEECCCCCCEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCHHHHHCCCCCCCCCC SGWKKAVKDHYLHSFAISTQGSVMSYRDNYLDLDPTYKDAYGLPLLRMTFDWKDNEGRMT CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCCHHCCCEEEEEEEEEECCCCHHH QFVSHKAAEVARAMNPKPASVAINAGKPGDHFDVGPYQSTHTTGGAIAGDRPDNSVVNKY HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LQSWDVPNVFVAGACSFPQNLGINPTGTIGAMTYYAAKAIRETYLKNPGPLVEA HHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9352901 [H]