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The map label for this gene is ydfH [H]

Identifier: 91781744

GI number: 91781744

Start: 397464

End: 398207

Strand: Reverse

Name: ydfH [H]

Synonym: Bxe_A4101

Alternate gene names: 91781744

Gene position: 398207-397464 (Counterclockwise)

Preceding gene: 91781749

Following gene: 91781743

Centisome position: 8.13

GC content: 63.71

Gene sequence:

>744_bases
ATGCCCCGCCCCACCAGTTCGCTCGAGTTGCTTCGCTCCGTTACGCTGTCCGGTCTCGTGCAGGAGGAGATCCTTCGCCG
GATCAAGACTGGCGAGCTCGAGGCCGGCATGAAACTCAACGAGATGGATCTCGCCGAGCATCTGAAAATCAGCCGCAGTC
CGGTGCGCGAGGCGTTCCGCGCACTCGAGGAAGCCGGTCTCGTGTGGCTCGAAAAGAATCGGGGCGTCTACATCCGCGAG
ATTTCCGATGCGGAAGCCGCCGAACTCTATGAAGTGCGCGCCGGACTCGACGAGTTGGCCGGCCGGCGGCTGGCGTCGCG
GATCACCGACACGCAGTTGCAGGATCTGCACGCCATGCTCGATCAACTCGAAGCCAGCTCGATCCATGGCGAGCTGAATA
ATTACTTCACGTTGAACATTGCGTTTCATGACCGGCTGATGGAACTGTCGGGCAACGCAACAATGCTTGGCCTGTACCGG
CAGGTGGTCAACCGCATGCATCTGCTGCGCCGCCGCGGCTTCTCCATTGCGGGCAGCTCGCAGGCGTCGCACACCGAACA
CCGGCTGATTCTCGACGCACTTGCAAGGCGCGACCCCGAAGCCGTCGCGCAGGCCATGCGTCAGCACGTGCAGGCGGGTT
TCCAGCGCGCAATCGCCGCGCACAACGCCGACGACACCGCGTCCGCAGCCGAAGTCCCTGCTGGCGAAGCGGCGCAAACC
ACCCTCGCCGACGGTTCGCGCTAG

Upstream 100 bases:

>100_bases
GTTCTAGTTGCGCGCTCGTGCGGTGAATAGTATGTTGTCGACAATCTTCAAGACGCAATGTGCGTAGTACACTGCCCGTT
TTCCTCATACAGGCCCGTCC

Downstream 100 bases:

>100_bases
CAACGCTAGCAAGCCCCACGCTTTGCAAACGCGCAGCACAGCGGCGCACGCATTTCAATACCGACTCGGAGCGGTCACCC
ATATGAGCGTTGAAAAACCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MPRPTSSLELLRSVTLSGLVQEEILRRIKTGELEAGMKLNEMDLAEHLKISRSPVREAFRALEEAGLVWLEKNRGVYIRE
ISDAEAAELYEVRAGLDELAGRRLASRITDTQLQDLHAMLDQLEASSIHGELNNYFTLNIAFHDRLMELSGNATMLGLYR
QVVNRMHLLRRRGFSIAGSSQASHTEHRLILDALARRDPEAVAQAMRQHVQAGFQRAIAAHNADDTASAAEVPAGEAAQT
TLADGSR

Sequences:

>Translated_247_residues
MPRPTSSLELLRSVTLSGLVQEEILRRIKTGELEAGMKLNEMDLAEHLKISRSPVREAFRALEEAGLVWLEKNRGVYIRE
ISDAEAAELYEVRAGLDELAGRRLASRITDTQLQDLHAMLDQLEASSIHGELNNYFTLNIAFHDRLMELSGNATMLGLYR
QVVNRMHLLRRRGFSIAGSSQASHTEHRLILDALARRDPEAVAQAMRQHVQAGFQRAIAAHNADDTASAAEVPAGEAAQT
TLADGSR
>Mature_246_residues
PRPTSSLELLRSVTLSGLVQEEILRRIKTGELEAGMKLNEMDLAEHLKISRSPVREAFRALEEAGLVWLEKNRGVYIREI
SDAEAAELYEVRAGLDELAGRRLASRITDTQLQDLHAMLDQLEASSIHGELNNYFTLNIAFHDRLMELSGNATMLGLYRQ
VVNRMHLLRRRGFSIAGSSQASHTEHRLILDALARRDPEAVAQAMRQHVQAGFQRAIAAHNADDTASAAEVPAGEAAQTT
LADGSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=204, Percent_Identity=30.3921568627451, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27387; Mature: 27256

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50949 HTH_GNTR ; PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPTSSLELLRSVTLSGLVQEEILRRIKTGELEAGMKLNEMDLAEHLKISRSPVREAFR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCHHHHHHHHH
ALEEAGLVWLEKNRGVYIREISDAEAAELYEVRAGLDELAGRRLASRITDTQLQDLHAML
HHHHCCCEEEECCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
DQLEASSIHGELNNYFTLNIAFHDRLMELSGNATMLGLYRQVVNRMHLLRRRGFSIAGSS
HHHHHHHHCCCCCCEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
QASHTEHRLILDALARRDPEAVAQAMRQHVQAGFQRAIAAHNADDTASAAEVPAGEAAQT
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHH
TLADGSR
HHCCCCC
>Mature Secondary Structure 
PRPTSSLELLRSVTLSGLVQEEILRRIKTGELEAGMKLNEMDLAEHLKISRSPVREAFR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCHHHHHHHHH
ALEEAGLVWLEKNRGVYIREISDAEAAELYEVRAGLDELAGRRLASRITDTQLQDLHAML
HHHHCCCEEEECCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
DQLEASSIHGELNNYFTLNIAFHDRLMELSGNATMLGLYRQVVNRMHLLRRRGFSIAGSS
HHHHHHHHCCCCCCEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
QASHTEHRLILDALARRDPEAVAQAMRQHVQAGFQRAIAAHNADDTASAAEVPAGEAAQT
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHH
TLADGSR
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]