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The map label for this gene is ymdB [C]

Identifier: 91781670

GI number: 91781670

Start: 321115

End: 321663

Strand: Direct

Name: ymdB [C]

Synonym: Bxe_A4176

Alternate gene names: 91781670

Gene position: 321115-321663 (Clockwise)

Preceding gene: 91781669

Following gene: 91781673

Centisome position: 6.56

GC content: 65.57

Gene sequence:

>549_bases
ATGCTCCGTTTCAATCGTTGCACGCTCGAAGCACGCGTGGTCGACATCACCGAACTCGCCGTGGATGCGATCGTCAATGC
CGCGAACACGTCGTTATTGGGCGGAGGCGGCGTGGATGGCGCGATTCATCGCGCGGCCGGCAAGGAATTGATCCGCGAGT
GCGAGACGCTCGGCGGCTGCGCGACCGGCGACGCGAAGCTGACACGCGGCTACCGCTTGCCGGCCAGATACGTGATTCAC
GCAGTGGGTCCGCGCTGGCGGGGCGGCGGGCATGGCGAGGCCGATTTACTGGCGTCCTGCTACCAGCGTTCGCTCGAGGT
GGCGCGCGAGGCGCAGTGCACGAGCATTGCGTTCCCCGCGATCAGTTGCGGTATCTACCATTTTCCCGCCGACGAGGCCG
TGCGGATTGCGCTCGGCACGGTGCTCGCCACCTTGCCGCGTACGCCGCAGATCGAACAGGTGGTGTTCGCCTGTTTCGAC
GACGCCATGTTCGCGCGCTACGAAGCTGAATTGATGCGCCGTCAGGCGCCGCCTTCGAAGCCGGTCTGA

Upstream 100 bases:

>100_bases
TAAGCCTTGTCTATCAGCCGTTTGGCGCGCAAAAGCGCTGAACGACTGCCCGCTATCGCTGTCCACGTTTTTATCGACGC
TACGGATCAGCGAGGTTCCC

Downstream 100 bases:

>100_bases
CGCCAGGCCTCGAACACCACGACAGCGACGGTATTCGACAGGTTCAGGCTGCGGTTGCCCGGCCGCATGGGCAGGCGCAC
GCGCTGTTCGTCGGCGAACT

Product: putative appr-1-p processing enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MLRFNRCTLEARVVDITELAVDAIVNAANTSLLGGGGVDGAIHRAAGKELIRECETLGGCATGDAKLTRGYRLPARYVIH
AVGPRWRGGGHGEADLLASCYQRSLEVAREAQCTSIAFPAISCGIYHFPADEAVRIALGTVLATLPRTPQIEQVVFACFD
DAMFARYEAELMRRQAPPSKPV

Sequences:

>Translated_182_residues
MLRFNRCTLEARVVDITELAVDAIVNAANTSLLGGGGVDGAIHRAAGKELIRECETLGGCATGDAKLTRGYRLPARYVIH
AVGPRWRGGGHGEADLLASCYQRSLEVAREAQCTSIAFPAISCGIYHFPADEAVRIALGTVLATLPRTPQIEQVVFACFD
DAMFARYEAELMRRQAPPSKPV
>Mature_182_residues
MLRFNRCTLEARVVDITELAVDAIVNAANTSLLGGGGVDGAIHRAAGKELIRECETLGGCATGDAKLTRGYRLPARYVIH
AVGPRWRGGGHGEADLLASCYQRSLEVAREAQCTSIAFPAISCGIYHFPADEAVRIALGTVLATLPRTPQIEQVVFACFD
DAMFARYEAELMRRQAPPSKPV

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=161, Percent_Identity=52.7950310559006, Blast_Score=157, Evalue=4e-39,
Organism=Homo sapiens, GI13569840, Length=169, Percent_Identity=47.9289940828402, Blast_Score=141, Evalue=4e-34,
Organism=Homo sapiens, GI207450721, Length=148, Percent_Identity=39.1891891891892, Blast_Score=100, Evalue=9e-22,
Organism=Homo sapiens, GI8923143, Length=148, Percent_Identity=39.1891891891892, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI154813199, Length=152, Percent_Identity=37.5, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI226371718, Length=172, Percent_Identity=30.8139534883721, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371716, Length=172, Percent_Identity=30.8139534883721, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371714, Length=172, Percent_Identity=30.8139534883721, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371712, Length=172, Percent_Identity=30.8139534883721, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371710, Length=172, Percent_Identity=30.8139534883721, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371706, Length=172, Percent_Identity=30.8139534883721, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI20336746, Length=174, Percent_Identity=29.3103448275862, Blast_Score=75, Evalue=3e-14,
Organism=Escherichia coli, GI1787283, Length=164, Percent_Identity=49.390243902439, Blast_Score=147, Evalue=5e-37,
Organism=Caenorhabditis elegans, GI17538214, Length=159, Percent_Identity=45.2830188679245, Blast_Score=129, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24586353, Length=156, Percent_Identity=37.8205128205128, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19588; Mature: 19588

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFNRCTLEARVVDITELAVDAIVNAANTSLLGGGGVDGAIHRAAGKELIRECETLGGC
CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCC
ATGDAKLTRGYRLPARYVIHAVGPRWRGGGHGEADLLASCYQRSLEVAREAQCTSIAFPA
CCCCHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECHH
ISCGIYHFPADEAVRIALGTVLATLPRTPQIEQVVFACFDDAMFARYEAELMRRQAPPSK
HHCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PV
CC
>Mature Secondary Structure
MLRFNRCTLEARVVDITELAVDAIVNAANTSLLGGGGVDGAIHRAAGKELIRECETLGGC
CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCC
ATGDAKLTRGYRLPARYVIHAVGPRWRGGGHGEADLLASCYQRSLEVAREAQCTSIAFPA
CCCCHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECHH
ISCGIYHFPADEAVRIALGTVLATLPRTPQIEQVVFACFDDAMFARYEAELMRRQAPPSK
HHCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]