| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91781521
Identifier: 91781521
GI number: 91781521
Start: 164040
End: 165494
Strand: Reverse
Name: 91781521
Synonym: Bxe_A4325
Alternate gene names: NA
Gene position: 165494-164040 (Counterclockwise)
Preceding gene: 91781522
Following gene: 91781516
Centisome position: 3.38
GC content: 69.42
Gene sequence:
>1455_bases ATGAATCGCAAATTCAAGCTGACGGCGATCGCCATGTGCGTCACGTCGATGATCATCCTGACAGGCTGCGGGAGCACGCT GACGAGGCCAGGTACGGGAAGTGGCGCGGGTGCAGGTGCCGGAGGCGGTTCGGGCGGCGGCACGCCGACGCCGACGCCGA CACCGACACCAACACCAACACCAACACCAACACCAACACCAACACCAACACCGACACCAACCCCCACCAGCGCCAACCCC ATCGGCGTCGTCGTGCAAAACACCGGCAACGTGATCACCGCCACCGGCCAAACCGTCTCCGCCGTCGGCAGCCAGATCGG CCTCACGCCGATTCCGGGCGCGAATCCGGCGACCACCACGGCGCTCGGCAACGTGGTATCGAATCTCGGCAACGGCGTGA CCGCCGTCGGCACAGGCGTGGCGAACGGGCTCGGCCAGCTTGGCAATTCCACCAATCCGCTCGGCACGACGCTCGGCAGC AGTGGCAACCTGGTCTACGACGCGGGCCAGGCCGTCAACAGCGCCGGCCAGTTGGTCACGAGCCTCGGCAGCGGCCCCAC CGCGCCGCTGAGCGCATTGACCACGCCGCTCGGCAGCACGGTCTCGACGGTCGGCAACGCGGTCAGCGGCCTCGGCACCC AACTCGGTTCGCAACTGACGAACGGCCCGATCCAGCAAGTCACGCAGACGGTCTCCACCGCGATCACGCCGATCACGAGC ACGCTCGCGCAGACGACGCAAACCGTCGGCGACACGACGGGTCTCGGCGCACCGCTAAACGGCCTGCTTTCGACAATCGG TCATGGTCTCGACAGCGCCGGCGGCAAGCTCAGCGGCGCGACCGGTAATCCGGTCGGCCAGAATCTCGGCAACGTCGTCA CCAAACTCGGCGACACGGTCACGTCCGCGGGCGGCCTGTTGACGGCTGGCGCCCCGAGTAGCGGCAATCCGCTCGGCGGC ATCACGGGCATTCTGAATCCGGGCAGCGGCGCAGGCACGGGCTCACCGCTCGCGCCGTTGACCAGCATCCTCACCGCGCT GCCCGGCACCTTGAGCGGTGGCCTGACGGGCGGAAGCGGCGCCGGCGGCCCGCTCGCACCGTTGACCAGTGTCGTCAGCA GCTTGACCGGCAGCCTCGGCGGCCTTGGCGGCACGGGCTCGGGTAGTCCGCTCGCGCCGCTTACCGGCGTCGTGAGTTCG GTCACTGGTGCCTTGAGCGGCGCGACGAACAGCAGCGGCAATCCGCTTGCGCCCGTGACCTCGGCCGTGTCGTCGCTGAC GGGCGCGCTGGGCTCGGCCACAGGATCGGGTGGCGGCGGCAGCAATCCGCTCGCGCCGGTCACCGGTTTGCTGACCACCG TCACCGGCGCCTTGAGCGGTGCGGCGACGTCGGCAGGCGGCACGACCGGCGGCGGCCTGCTCGGCGGTCTCGGCGCTCTG GCAATCAGGAAGTGA
Upstream 100 bases:
>100_bases ACGTTTACTCCATGCCGCCGACGTGTGGATAAAAATGGCATAGGCCTTGCAATTAGCTCCCCCAGGCAAAGTAATTTCCA GAACTACGGGGGAGCAGACC
Downstream 100 bases:
>100_bases CGAACAAAGACAACGACAGCAAATAACGGCGCGAACAAACAAGCGTCGAAGGGGGCGGCGAGCCGGGCAACCGGCTCGCC GATTTTTTTGCCGGGCTTTT
Product: putative hemagglutinin-related transmembrane protein
Products: NA
Alternate protein names: Hemagglutinin-Related Transmembrane Protein; Triple Helix Repeat-Containing Collagen; Collagen Triple Helix Repeat; Hemagglutinin Transmembrane Protein
Number of amino acids: Translated: 484; Mature: 484
Protein sequence:
>484_residues MNRKFKLTAIAMCVTSMIILTGCGSTLTRPGTGSGAGAGAGGGSGGGTPTPTPTPTPTPTPTPTPTPTPTPTPTPTSANP IGVVVQNTGNVITATGQTVSAVGSQIGLTPIPGANPATTTALGNVVSNLGNGVTAVGTGVANGLGQLGNSTNPLGTTLGS SGNLVYDAGQAVNSAGQLVTSLGSGPTAPLSALTTPLGSTVSTVGNAVSGLGTQLGSQLTNGPIQQVTQTVSTAITPITS TLAQTTQTVGDTTGLGAPLNGLLSTIGHGLDSAGGKLSGATGNPVGQNLGNVVTKLGDTVTSAGGLLTAGAPSSGNPLGG ITGILNPGSGAGTGSPLAPLTSILTALPGTLSGGLTGGSGAGGPLAPLTSVVSSLTGSLGGLGGTGSGSPLAPLTGVVSS VTGALSGATNSSGNPLAPVTSAVSSLTGALGSATGSGGGGSNPLAPVTGLLTTVTGALSGAATSAGGTTGGGLLGGLGAL AIRK
Sequences:
>Translated_484_residues MNRKFKLTAIAMCVTSMIILTGCGSTLTRPGTGSGAGAGAGGGSGGGTPTPTPTPTPTPTPTPTPTPTPTPTPTPTSANP IGVVVQNTGNVITATGQTVSAVGSQIGLTPIPGANPATTTALGNVVSNLGNGVTAVGTGVANGLGQLGNSTNPLGTTLGS SGNLVYDAGQAVNSAGQLVTSLGSGPTAPLSALTTPLGSTVSTVGNAVSGLGTQLGSQLTNGPIQQVTQTVSTAITPITS TLAQTTQTVGDTTGLGAPLNGLLSTIGHGLDSAGGKLSGATGNPVGQNLGNVVTKLGDTVTSAGGLLTAGAPSSGNPLGG ITGILNPGSGAGTGSPLAPLTSILTALPGTLSGGLTGGSGAGGPLAPLTSVVSSLTGSLGGLGGTGSGSPLAPLTGVVSS VTGALSGATNSSGNPLAPVTSAVSSLTGALGSATGSGGGGSNPLAPVTGLLTTVTGALSGAATSAGGTTGGGLLGGLGAL AIRK >Mature_484_residues MNRKFKLTAIAMCVTSMIILTGCGSTLTRPGTGSGAGAGAGGGSGGGTPTPTPTPTPTPTPTPTPTPTPTPTPTPTSANP IGVVVQNTGNVITATGQTVSAVGSQIGLTPIPGANPATTTALGNVVSNLGNGVTAVGTGVANGLGQLGNSTNPLGTTLGS SGNLVYDAGQAVNSAGQLVTSLGSGPTAPLSALTTPLGSTVSTVGNAVSGLGTQLGSQLTNGPIQQVTQTVSTAITPITS TLAQTTQTVGDTTGLGAPLNGLLSTIGHGLDSAGGKLSGATGNPVGQNLGNVVTKLGDTVTSAGGLLTAGAPSSGNPLGG ITGILNPGSGAGTGSPLAPLTSILTALPGTLSGGLTGGSGAGGPLAPLTSVVSSLTGSLGGLGGTGSGSPLAPLTGVVSS VTGALSGATNSSGNPLAPVTSAVSSLTGALGSATGSGGGGSNPLAPVTGLLTTVTGALSGAATSAGGTTGGGLLGGLGAL AIRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44330; Mature: 44330
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRKFKLTAIAMCVTSMIILTGCGSTLTRPGTGSGAGAGAGGGSGGGTPTPTPTPTPTPT CCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PTPTPTPTPTPTPTPTSANPIGVVVQNTGNVITATGQTVSAVGSQIGLTPIPGANPATTT CCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHCCCCCCCCCCCHHHH ALGNVVSNLGNGVTAVGTGVANGLGQLGNSTNPLGTTLGSSGNLVYDAGQAVNSAGQLVT HHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHHH SLGSGPTAPLSALTTPLGSTVSTVGNAVSGLGTQLGSQLTNGPIQQVTQTVSTAITPITS HHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH TLAQTTQTVGDTTGLGAPLNGLLSTIGHGLDSAGGKLSGATGNPVGQNLGNVVTKLGDTV HHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH TSAGGLLTAGAPSSGNPLGGITGILNPGSGAGTGSPLAPLTSILTALPGTLSGGLTGGSG HHCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC AGGPLAPLTSVVSSLTGSLGGLGGTGSGSPLAPLTGVVSSVTGALSGATNSSGNPLAPVT CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH SAVSSLTGALGSATGSGGGGSNPLAPVTGLLTTVTGALSGAATSAGGTTGGGLLGGLGAL HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH AIRK HCCC >Mature Secondary Structure MNRKFKLTAIAMCVTSMIILTGCGSTLTRPGTGSGAGAGAGGGSGGGTPTPTPTPTPTPT CCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PTPTPTPTPTPTPTPTSANPIGVVVQNTGNVITATGQTVSAVGSQIGLTPIPGANPATTT CCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHCCCCCCCCCCCHHHH ALGNVVSNLGNGVTAVGTGVANGLGQLGNSTNPLGTTLGSSGNLVYDAGQAVNSAGQLVT HHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHHH SLGSGPTAPLSALTTPLGSTVSTVGNAVSGLGTQLGSQLTNGPIQQVTQTVSTAITPITS HHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH TLAQTTQTVGDTTGLGAPLNGLLSTIGHGLDSAGGKLSGATGNPVGQNLGNVVTKLGDTV HHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH TSAGGLLTAGAPSSGNPLGGITGILNPGSGAGTGSPLAPLTSILTALPGTLSGGLTGGSG HHCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC AGGPLAPLTSVVSSLTGSLGGLGGTGSGSPLAPLTGVVSSVTGALSGATNSSGNPLAPVT CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH SAVSSLTGALGSATGSGGGGSNPLAPVTGLLTTVTGALSGAATSAGGTTGGGLLGGLGAL HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH AIRK HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA