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The map label for this gene is rbsR [H]

Identifier: 91781507

GI number: 91781507

Start: 148298

End: 149419

Strand: Reverse

Name: rbsR [H]

Synonym: Bxe_A4339

Alternate gene names: 91781507

Gene position: 149419-148298 (Counterclockwise)

Preceding gene: 91781509

Following gene: 91781506

Centisome position: 3.05

GC content: 63.55

Gene sequence:

>1122_bases
ATGCCCCAGTTCCAGCGCCGCTGCAGCGCGGCCCGCACAATGAAAAAATCGACCCAGCGCCGTCCGACCATGACCGACAT
CGCCAAGCTCACTGGCGTGTCGCAATCGACAGTCTCGCTCGTGCTGAACAACGCGACCGGCGCGAAGTTCTCCGAGGCCA
CCCGCAACAAGGTGCTGAAAGCCGCGCACGACCTCGGCTACCGGCTGTCGCTGCGCGAGCCGGTATCGGCTTCGAGCGAC
GAGCGCAATCTGATCGTCTATCTGGCCGACGAAATTTCCACGAGTCCGCATCCGGTCGTCAACGTCGACGGCGCGCGTGA
CGCGGCCTACGCGAGCGGCAAGATGCTGGCGGTCTATTCGACGCACGGCAACGCCGACATCGAAAAGCAGGTGCTGGACG
CCACGCTGTCGAATCCGCACGTGTTCGGCGTGATTTACGCGACCGTCTATACGCGCAAGGTGACGCCGCCGGTGGCGCTC
TCGCAGGTGCCGACCGTGCTGCTGAATTGCTATACGGGCGAAGGCGGGTTTTCGTCGGTGGTGCCCGCTGAAGTGGCCGG
CGGTCACCTGGCGACCGACTACCTGTTGCAGGCCGGACACCGGCGGATCGGCTATATCAACGGCGAACCCTGGCAGGATG
CGTCGAAAGACCGGCTCAAAGGCTACCGCACCGCGCTCGCCACCGCCGACCTGCCTTTCGCGCCGGAAATGGTGCGCGAC
GGCGACTGGAGTTCGGGCCTCGGCTTTGAACTGACGCTCTCGCTGATGCGCGAGCCCAATCCACCGACCGCGATTTTCTG
CGCCAACGACCTGACCGCCATCGGCGCCATCGAAGCCCTGAAACAACTCGGCCTGCGCGTGCCCGAAGACGTCTCCGTGC
TCGGCTACGACGACCAGGAAATCGCCCGTCATACGCATCCGCCTCTCTCGACCGTCGTGCTGCCGAACTACGAACTGGGG
CGCTGGGCCGTCGAAACCCTGCTGCAGGAAGAACACAATCGCGCCGCCGGCGCGCCGGTTCGGCATCGCATGGTCAAGCT
CGACGGTCCGCTTGTCGAACGCGCTTCGGTCAGGGTAATTACCGAGGCAAAAAAGCCAATAACTAATATTATTAGTGATT
GA

Upstream 100 bases:

>100_bases
CTGTGTGCGACGATCGATCGTCACCTCCCAGATGGCGGGTTAGCGCGCGTTGCCGCGCGCATATTATTAGTGGTACCGTC
AACACCACGATGCCCACGGC

Downstream 100 bases:

>100_bases
CCGATAATAATTTCAGGTGAAATAATCGGCACGTCGGGTCGGGCAAACACCGCCGGCCGGCAGGAGCAACACTAAAAGCA
AATATACCTACCTCACCAGG

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MPQFQRRCSAARTMKKSTQRRPTMTDIAKLTGVSQSTVSLVLNNATGAKFSEATRNKVLKAAHDLGYRLSLREPVSASSD
ERNLIVYLADEISTSPHPVVNVDGARDAAYASGKMLAVYSTHGNADIEKQVLDATLSNPHVFGVIYATVYTRKVTPPVAL
SQVPTVLLNCYTGEGGFSSVVPAEVAGGHLATDYLLQAGHRRIGYINGEPWQDASKDRLKGYRTALATADLPFAPEMVRD
GDWSSGLGFELTLSLMREPNPPTAIFCANDLTAIGAIEALKQLGLRVPEDVSVLGYDDQEIARHTHPPLSTVVLPNYELG
RWAVETLLQEEHNRAAGAPVRHRMVKLDGPLVERASVRVITEAKKPITNIISD

Sequences:

>Translated_373_residues
MPQFQRRCSAARTMKKSTQRRPTMTDIAKLTGVSQSTVSLVLNNATGAKFSEATRNKVLKAAHDLGYRLSLREPVSASSD
ERNLIVYLADEISTSPHPVVNVDGARDAAYASGKMLAVYSTHGNADIEKQVLDATLSNPHVFGVIYATVYTRKVTPPVAL
SQVPTVLLNCYTGEGGFSSVVPAEVAGGHLATDYLLQAGHRRIGYINGEPWQDASKDRLKGYRTALATADLPFAPEMVRD
GDWSSGLGFELTLSLMREPNPPTAIFCANDLTAIGAIEALKQLGLRVPEDVSVLGYDDQEIARHTHPPLSTVVLPNYELG
RWAVETLLQEEHNRAAGAPVRHRMVKLDGPLVERASVRVITEAKKPITNIISD
>Mature_372_residues
PQFQRRCSAARTMKKSTQRRPTMTDIAKLTGVSQSTVSLVLNNATGAKFSEATRNKVLKAAHDLGYRLSLREPVSASSDE
RNLIVYLADEISTSPHPVVNVDGARDAAYASGKMLAVYSTHGNADIEKQVLDATLSNPHVFGVIYATVYTRKVTPPVALS
QVPTVLLNCYTGEGGFSSVVPAEVAGGHLATDYLLQAGHRRIGYINGEPWQDASKDRLKGYRTALATADLPFAPEMVRDG
DWSSGLGFELTLSLMREPNPPTAIFCANDLTAIGAIEALKQLGLRVPEDVSVLGYDDQEIARHTHPPLSTVVLPNYELGR
WAVETLLQEEHNRAAGAPVRHRMVKLDGPLVERASVRVITEAKKPITNIISD

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=356, Percent_Identity=29.4943820224719, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790194, Length=341, Percent_Identity=33.1378299120235, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787948, Length=347, Percent_Identity=28.2420749279539, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786540, Length=316, Percent_Identity=29.1139240506329, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1789202, Length=300, Percent_Identity=30.6666666666667, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1789068, Length=310, Percent_Identity=29.0322580645161, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788474, Length=308, Percent_Identity=27.9220779220779, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI48994940, Length=341, Percent_Identity=27.5659824046921, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787580, Length=313, Percent_Identity=23.6421725239617, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789456, Length=318, Percent_Identity=24.8427672955975, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787906, Length=345, Percent_Identity=25.7971014492754, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 40536; Mature: 40404

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQFQRRCSAARTMKKSTQRRPTMTDIAKLTGVSQSTVSLVLNNATGAKFSEATRNKVLK
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH
AAHDLGYRLSLREPVSASSDERNLIVYLADEISTSPHPVVNVDGARDAAYASGKMLAVYS
HHHHCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCHHCCCCEEEEEE
THGNADIEKQVLDATLSNPHVFGVIYATVYTRKVTPPVALSQVPTVLLNCYTGEGGFSSV
CCCCCHHHHHHHHHHCCCCEEEEEEEEEHHHHCCCCCHHHHHHCCEEEEEECCCCCCCCC
VPAEVAGGHLATDYLLQAGHRRIGYINGEPWQDASKDRLKGYRTALATADLPFAPEMVRD
CCHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCC
GDWSSGLGFELTLSLMREPNPPTAIFCANDLTAIGAIEALKQLGLRVPEDVSVLGYDDQE
CCCCCCCCHHEEHEEHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHH
IARHTHPPLSTVVLPNYELGRWAVETLLQEEHNRAAGAPVRHRMVKLDGPLVERASVRVI
HHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCHHHCCCEEEE
TEAKKPITNIISD
EHHHHHHHHHHCC
>Mature Secondary Structure 
PQFQRRCSAARTMKKSTQRRPTMTDIAKLTGVSQSTVSLVLNNATGAKFSEATRNKVLK
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH
AAHDLGYRLSLREPVSASSDERNLIVYLADEISTSPHPVVNVDGARDAAYASGKMLAVYS
HHHHCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCHHCCCCEEEEEE
THGNADIEKQVLDATLSNPHVFGVIYATVYTRKVTPPVALSQVPTVLLNCYTGEGGFSSV
CCCCCHHHHHHHHHHCCCCEEEEEEEEEHHHHCCCCCHHHHHHCCEEEEEECCCCCCCCC
VPAEVAGGHLATDYLLQAGHRRIGYINGEPWQDASKDRLKGYRTALATADLPFAPEMVRD
CCHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCC
GDWSSGLGFELTLSLMREPNPPTAIFCANDLTAIGAIEALKQLGLRVPEDVSVLGYDDQE
CCCCCCCCHHEEHEEHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHH
IARHTHPPLSTVVLPNYELGRWAVETLLQEEHNRAAGAPVRHRMVKLDGPLVERASVRVI
HHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCHHHCCCEEEE
TEAKKPITNIISD
EHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]