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The map label for this gene is dapF [H]

Identifier: 91781473

GI number: 91781473

Start: 106734

End: 107597

Strand: Reverse

Name: dapF [H]

Synonym: Bxe_A4373

Alternate gene names: 91781473

Gene position: 107597-106734 (Counterclockwise)

Preceding gene: 91781474

Following gene: 91781472

Centisome position: 2.2

GC content: 67.01

Gene sequence:

>864_bases
ATGAAACTGAAATTCACCAAGATGCACGGCGCGGGCAACGACTTCGTCGTGCTCGACGGCTACACCCAACCGGTCAACCT
GACGCCGGCGCAGGTGCGCGCGCTCGCGGACCGGCATTTCGGCGTCGGCGCCGACCAGTTGCTGCTGGTCGAAAAGCCCA
CGGTGGCCGGTGTCGATTTCAGATATCGCATCTTCAATTGCGACGGCGGCGAAGTGGAGCATTGCGGCAACGGCGCGCGC
TGCTTCGTCAAGTTCGTGCGCGAGCGCGGCCTCACCGATCAACGCAGCGTGCGCGTGCAGGTGCAGAAGGGCACCATCAC
GCTGACCATGCAGGAAAACGGCGAAGTGCTGGTCGACATGGGCACGCCCGTGTTCGACCCGGAGCGCGTGCCGTTCGCCA
CCAAAGGCCTCGAAGGCCGCCGCGAGGGAGCGGACACGCTCTGGCCGCTCGACGTGAGCGGCACGACACGGTGGATTTCG
GTGGTCTCGATGGGCAATCCGCACGCCGTGCAGGTCGTCGGCGACGTCGAAGCGTTCCCGGTGCTGGCCGAAGGCCCGGT
GATCGAGCGTCATGCGCGTTTTCCGCAGCGGGTGAACGCGGGCTTCATGCAGATAGTCGGCCGCAATGAAATCAGGCTGC
GCGTGTACGAGCGCGGCGCGGGTGAAACGCTGGCGTGCGGCACGGGCGCATGCGCGGCGGTCGCGGCCGGCATCCGGCGC
GGGCTGCTCGACTCACCCGTGCGCGTGCACACGCACGGCGGCGACCTGACCATCTCGTGGGACAGCACGCGAGAAGGCGA
ACCGCTACTCATGGCCGGACCGGCCGTGACCGTTTTCGAAGGCGAGATCGAGCTGCCCGACTGA

Upstream 100 bases:

>100_bases
GAACTGAACGGCCGCCCACGCGGCCCGTGTGGAAAGCGACCGGACGCGGAAAAAATACGGCGTTCGGCTCACCTGCGGGC
GCGTCACTTACAATAGCGTG

Downstream 100 bases:

>100_bases
CCGGCGGCGTCACAGGCCGCCTGAACTCATTGACCGACGCGCCGCCCCGAGGCGTCGCCCCGAAGTCTTTTAGCCGAAAC
CATGAACGATCGCGAAGTCG

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGAR
CFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWIS
VVSMGNPHAVQVVGDVEAFPVLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGIRR
GLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELPD

Sequences:

>Translated_287_residues
MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGAR
CFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWIS
VVSMGNPHAVQVVGDVEAFPVLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGIRR
GLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELPD
>Mature_287_residues
MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGAR
CFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWIS
VVSMGNPHAVQVVGDVEAFPVLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGIRR
GLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELPD

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=283, Percent_Identity=53.7102473498233, Blast_Score=293, Evalue=1e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 31177; Mature: 31177

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF
CCEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEECCEE
RYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVDM
EEEEEECCCCCHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCCEEEEC
GTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISVVSMGNPHAVQVVGDVEAFP
CCCCCCCCCCCEECCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCE
VLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGIRR
EEECCCEEHHHHCCCHHHCCCEEEEECCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHH
GLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELPD
CCCCCCEEEEECCCEEEEEECCCCCCCEEEEECCEEEEEECEEECCC
>Mature Secondary Structure
MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF
CCEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEECCEE
RYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVDM
EEEEEECCCCCHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCCEEEEC
GTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISVVSMGNPHAVQVVGDVEAFP
CCCCCCCCCCCEECCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCE
VLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGIRR
EEECCCEEHHHHCCCHHHCCCEEEEECCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHH
GLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELPD
CCCCCCEEEEECCCEEEEEECCCCCCCEEEEECCEEEEEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA