Click here to switch to the map view.

The map label for this gene is ntrY [H]

Identifier: 91781436

GI number: 91781436

Start: 67891

End: 70293

Strand: Direct

Name: ntrY [H]

Synonym: Bxe_A4410

Alternate gene names: 91781436

Gene position: 67891-70293 (Clockwise)

Preceding gene: 91781435

Following gene: 91781437

Centisome position: 1.39

GC content: 63.96

Gene sequence:

>2403_bases
GTGCGCTCCGCCACCAGTGTCAGCAGCATCGTCGTGCGCGTGCTGGTGTCCACGGTCGCGGTCACGGCCGTGTTGCTGCT
CGTGCTGCTGGCCGCCGCCAGCGCGAACACCGAATTCTTCGACCGCTATTACCAGTGGCTCTATGCGGCCAATCTCGCGG
TCGCGATGATCTTTTTGCTGGTGGTGGCGACGCTCGTCATCATCATCATCGCGCGGCTGAGAAAGGGTAAGTTCGGCACG
CGGCTCCTCGCGAAACTTGCGTTCTTCATGGCGCTGGTCGGTGTCGTGCCGGGCGGGATCATCTACGTCGTGTCATACCA
GTTCGTGTCGCGCAGCATCGAGTCGTGGTTCGACGTGAATGTCGAAACCGCGCTCACGTCCGGCCTGAATCTCGGGCGCG
GCATGCTCGACGCGTCGCTGTCCGATCTGCAGACCAAGGGCCGTTTGATGTCCGAGCAGCTCGCGAGCGCGGACGCCGCC
GGCACCACGCTCACGCTGCTGCGTCTGCGCGATCAGTTCGGCGTGCAGGATGCGACGATCGTCGAACCCACGCGCAGCAT
GTCGGGTGCGACGCCCGATATGCACGTGGTCGCGCAGGCATCCGGCAACTACGCGACGCTCGTGCCGAACGACCTGCCCA
CGCCGCTGATGATCGATCAGGCGCGCGGCCGCGGCTATGCGGCGATCGAAGGCGAAGTGGACGGCGATCCTCACGCGCAT
GGCAGCAAGGGCGTGCTGCGTCTGCGCGTGGTGCAGCGCATTCCCGACTCGAACGCATCGCTGCTGCAGCCCACCGAACG
CTTCCTGCAACTCACGCAGCCGGTGTCGCCCTCGCTCGCGCGCAACGCCGATGCGGTGCAGCGCGCGTATCGCGAGTACC
AGGAGAAGGCGCTCGGCCGCACGGGTCTGCGCAAGATGTACATTGGCACGCTGACGCTTGCGCTGTTCCTCGCCACCTTC
ATCGCGATGATGCTGGCGCTCGCGCTCGGCAATCAGCTGGCGCGGCCGTTGTTCCTGCTCGCGCAAGGCACCAAGGAAAT
CACGGAAGGCGACTACACGCCGAAGCGCGAAATCAAATCGCGCGACGAACTGGGCTTTCTCACGCAGTCGTTCAACGCGA
TGACACGGCAGTTGTCCGAAGCGCGCGCGGCCGTCGAGAACAACCGCATCGCGCTCGAACATTCGAAGGCGTATCTGGAA
AGCATTCTCGCGAACCTGACCGCGGGCGTGTTCGTATTCGACCGGCAGTTCAGGTTGACCACGGCGAATCGCGGCGCCGA
ACGGATTTTCCGTCAGCCGTTCCAGGCCGTGATGGGTTCGGCGCTGGATCAGATCGGCGTGCTGAGCGAATTCGGCGGCA
TGGTCCGCAAGGCTTTTGCCGATCGCGAAGCGGCGAGCGGCGATGGTCACGACGATCGCGGCCACTGGCAGCAGCAGTTT
TCGGTGCAGGTGCCGGGCGAAACCGAGCCGCTCACCTTGCTCGTGCGCGGCGCGCGGCTCGTCTCGGCAACGGATCGCGA
TGCGGAAGACATGCAGACGTCCGGCTACGTGGTGGTGTTCGACGATATTTCGGACGTGATCTCCGCGCAGCGATCGATCG
CATGGGGCGAGGTCGCGCGGCGGCTCGCGCACGAGATCAAGAATCCGCTCACGCCGATCCAGCTTTCCGCCGAGCGTTTG
CAGATGAAGCTCGCCGACAAGCTGTCGCCATCCGACGCCGATGTGCTGAAGCGCGGCGCGACCACGATCGTCAACCAGGT
CGCCGCCATGAAGCAGATGGTCGATAATTTCCGCGACTATGCGCGCACGCCGCCGGCGGTGCTCGCGCATCTGCAACTGA
ATGATCTGGTCAGCGAAGTGCTCACGCTGTACGGTATCGAAGAAGGCAAAGGCGCGATCCAGGTCGAGCTCGCTGCGTTG
CCGGCCATTCGCGGCGACGCGACGCAATTGCGTCAGGTGATTCACAACCTGCTGCAGAACGCGCAGGATGCGGTAGCGGA
CCTCGAGCATCCGCGTGTGTTGCTCGAGACGAGGACAGTAGAATACGGAGACCCCGACGCGGAAGGCAAAGTACGCGTCG
CGGTGCGTCTGACGGTGTCGGACAACGGGCCGGGCTTCTCCGCGCGTATCCTCACTCGTGCATTCGAACCTTACGTGACG
ACCAAGGCCAAAGGTACGGGCCTGGGTCTTGCGATGGTCAAGAAGATCGTCGACGAACACGGCGCGCGCATCGACATCCG
CAATCGTATGAAAGCGGGCGATGTCATCGAGGGCGCGCAGATCTCGATCCTCTTCCTTCAACTGGCAGACGATGCCGCGA
CACCTGGAACAGGGCCGCGTCCGGCGCACGGCGGTGCGTCGCAGGGAAAGACAAAAGCAACAGTGCAGACAAGGGCAGCG
TAA

Upstream 100 bases:

>100_bases
CCCAAGCCGTTTCAGATCGACGCGGTGAACAACCGCGACTGGAATCTCGCATCCGAATGGAAGCGCTTTACCTTTACGGT
GACCGAACGTGCTAAATAAA

Downstream 100 bases:

>100_bases
ATGGCAACCATCCTGGTGGTAGATGATGAAATGGGCATCCGGGAATTGCTCTCGGAGATCCTGAGCGACGAAGGGCATGT
CGTGGAGGCCGCGGAAAACG

Product: multi-sensor Signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 800; Mature: 800

Protein sequence:

>800_residues
MRSATSVSSIVVRVLVSTVAVTAVLLLVLLAAASANTEFFDRYYQWLYAANLAVAMIFLLVVATLVIIIIARLRKGKFGT
RLLAKLAFFMALVGVVPGGIIYVVSYQFVSRSIESWFDVNVETALTSGLNLGRGMLDASLSDLQTKGRLMSEQLASADAA
GTTLTLLRLRDQFGVQDATIVEPTRSMSGATPDMHVVAQASGNYATLVPNDLPTPLMIDQARGRGYAAIEGEVDGDPHAH
GSKGVLRLRVVQRIPDSNASLLQPTERFLQLTQPVSPSLARNADAVQRAYREYQEKALGRTGLRKMYIGTLTLALFLATF
IAMMLALALGNQLARPLFLLAQGTKEITEGDYTPKREIKSRDELGFLTQSFNAMTRQLSEARAAVENNRIALEHSKAYLE
SILANLTAGVFVFDRQFRLTTANRGAERIFRQPFQAVMGSALDQIGVLSEFGGMVRKAFADREAASGDGHDDRGHWQQQF
SVQVPGETEPLTLLVRGARLVSATDRDAEDMQTSGYVVVFDDISDVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERL
QMKLADKLSPSDADVLKRGATTIVNQVAAMKQMVDNFRDYARTPPAVLAHLQLNDLVSEVLTLYGIEEGKGAIQVELAAL
PAIRGDATQLRQVIHNLLQNAQDAVADLEHPRVLLETRTVEYGDPDAEGKVRVAVRLTVSDNGPGFSARILTRAFEPYVT
TKAKGTGLGLAMVKKIVDEHGARIDIRNRMKAGDVIEGAQISILFLQLADDAATPGTGPRPAHGGASQGKTKATVQTRAA

Sequences:

>Translated_800_residues
MRSATSVSSIVVRVLVSTVAVTAVLLLVLLAAASANTEFFDRYYQWLYAANLAVAMIFLLVVATLVIIIIARLRKGKFGT
RLLAKLAFFMALVGVVPGGIIYVVSYQFVSRSIESWFDVNVETALTSGLNLGRGMLDASLSDLQTKGRLMSEQLASADAA
GTTLTLLRLRDQFGVQDATIVEPTRSMSGATPDMHVVAQASGNYATLVPNDLPTPLMIDQARGRGYAAIEGEVDGDPHAH
GSKGVLRLRVVQRIPDSNASLLQPTERFLQLTQPVSPSLARNADAVQRAYREYQEKALGRTGLRKMYIGTLTLALFLATF
IAMMLALALGNQLARPLFLLAQGTKEITEGDYTPKREIKSRDELGFLTQSFNAMTRQLSEARAAVENNRIALEHSKAYLE
SILANLTAGVFVFDRQFRLTTANRGAERIFRQPFQAVMGSALDQIGVLSEFGGMVRKAFADREAASGDGHDDRGHWQQQF
SVQVPGETEPLTLLVRGARLVSATDRDAEDMQTSGYVVVFDDISDVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERL
QMKLADKLSPSDADVLKRGATTIVNQVAAMKQMVDNFRDYARTPPAVLAHLQLNDLVSEVLTLYGIEEGKGAIQVELAAL
PAIRGDATQLRQVIHNLLQNAQDAVADLEHPRVLLETRTVEYGDPDAEGKVRVAVRLTVSDNGPGFSARILTRAFEPYVT
TKAKGTGLGLAMVKKIVDEHGARIDIRNRMKAGDVIEGAQISILFLQLADDAATPGTGPRPAHGGASQGKTKATVQTRAA
>Mature_800_residues
MRSATSVSSIVVRVLVSTVAVTAVLLLVLLAAASANTEFFDRYYQWLYAANLAVAMIFLLVVATLVIIIIARLRKGKFGT
RLLAKLAFFMALVGVVPGGIIYVVSYQFVSRSIESWFDVNVETALTSGLNLGRGMLDASLSDLQTKGRLMSEQLASADAA
GTTLTLLRLRDQFGVQDATIVEPTRSMSGATPDMHVVAQASGNYATLVPNDLPTPLMIDQARGRGYAAIEGEVDGDPHAH
GSKGVLRLRVVQRIPDSNASLLQPTERFLQLTQPVSPSLARNADAVQRAYREYQEKALGRTGLRKMYIGTLTLALFLATF
IAMMLALALGNQLARPLFLLAQGTKEITEGDYTPKREIKSRDELGFLTQSFNAMTRQLSEARAAVENNRIALEHSKAYLE
SILANLTAGVFVFDRQFRLTTANRGAERIFRQPFQAVMGSALDQIGVLSEFGGMVRKAFADREAASGDGHDDRGHWQQQF
SVQVPGETEPLTLLVRGARLVSATDRDAEDMQTSGYVVVFDDISDVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERL
QMKLADKLSPSDADVLKRGATTIVNQVAAMKQMVDNFRDYARTPPAVLAHLQLNDLVSEVLTLYGIEEGKGAIQVELAAL
PAIRGDATQLRQVIHNLLQNAQDAVADLEHPRVLLETRTVEYGDPDAEGKVRVAVRLTVSDNGPGFSARILTRAFEPYVT
TKAKGTGLGLAMVKKIVDEHGARIDIRNRMKAGDVIEGAQISILFLQLADDAATPGTGPRPAHGGASQGKTKATVQTRAA

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=416, Percent_Identity=25, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1790300, Length=351, Percent_Identity=25.6410256410256, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1790436, Length=227, Percent_Identity=29.5154185022026, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 86813; Mature: 86813

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSATSVSSIVVRVLVSTVAVTAVLLLVLLAAASANTEFFDRYYQWLYAANLAVAMIFLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVATLVIIIIARLRKGKFGTRLLAKLAFFMALVGVVPGGIIYVVSYQFVSRSIESWFDVN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCC
VETALTSGLNLGRGMLDASLSDLQTKGRLMSEQLASADAAGTTLTLLRLRDQFGVQDATI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEE
VEPTRSMSGATPDMHVVAQASGNYATLVPNDLPTPLMIDQARGRGYAAIEGEVDGDPHAH
ECCHHHCCCCCCCCEEEEECCCCEEEECCCCCCCCEEEECCCCCCEEEEECCCCCCCCCC
GSKGVLRLRVVQRIPDSNASLLQPTERFLQLTQPVSPSLARNADAVQRAYREYQEKALGR
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHH
TGLRKMYIGTLTLALFLATFIAMMLALALGNQLARPLFLLAQGTKEITEGDYTPKREIKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHCC
RDELGFLTQSFNAMTRQLSEARAAVENNRIALEHSKAYLESILANLTAGVFVFDRQFRLT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHEEEECEEEEE
TANRGAERIFRQPFQAVMGSALDQIGVLSEFGGMVRKAFADREAASGDGHDDRGHWQQQF
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEE
SVQVPGETEPLTLLVRGARLVSATDRDAEDMQTSGYVVVFDDISDVISAQRSIAWGEVAR
EEECCCCCCCEEEEEECCHHEECCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
RLAHEIKNPLTPIQLSAERLQMKLADKLSPSDADVLKRGATTIVNQVAAMKQMVDNFRDY
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTPPAVLAHLQLNDLVSEVLTLYGIEEGKGAIQVELAALPAIRGDATQLRQVIHNLLQN
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
AQDAVADLEHPRVLLETRTVEYGDPDAEGKVRVAVRLTVSDNGPGFSARILTRAFEPYVT
HHHHHHHCCCCEEEEEECEEECCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCEE
TKAKGTGLGLAMVKKIVDEHGARIDIRNRMKAGDVIEGAQISILFLQLADDAATPGTGPR
CCCCCCCHHHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
PAHGGASQGKTKATVQTRAA
CCCCCCCCCCCEECEEECCC
>Mature Secondary Structure
MRSATSVSSIVVRVLVSTVAVTAVLLLVLLAAASANTEFFDRYYQWLYAANLAVAMIFLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVATLVIIIIARLRKGKFGTRLLAKLAFFMALVGVVPGGIIYVVSYQFVSRSIESWFDVN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCC
VETALTSGLNLGRGMLDASLSDLQTKGRLMSEQLASADAAGTTLTLLRLRDQFGVQDATI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEE
VEPTRSMSGATPDMHVVAQASGNYATLVPNDLPTPLMIDQARGRGYAAIEGEVDGDPHAH
ECCHHHCCCCCCCCEEEEECCCCEEEECCCCCCCCEEEECCCCCCEEEEECCCCCCCCCC
GSKGVLRLRVVQRIPDSNASLLQPTERFLQLTQPVSPSLARNADAVQRAYREYQEKALGR
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHH
TGLRKMYIGTLTLALFLATFIAMMLALALGNQLARPLFLLAQGTKEITEGDYTPKREIKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHCC
RDELGFLTQSFNAMTRQLSEARAAVENNRIALEHSKAYLESILANLTAGVFVFDRQFRLT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHEEEECEEEEE
TANRGAERIFRQPFQAVMGSALDQIGVLSEFGGMVRKAFADREAASGDGHDDRGHWQQQF
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEE
SVQVPGETEPLTLLVRGARLVSATDRDAEDMQTSGYVVVFDDISDVISAQRSIAWGEVAR
EEECCCCCCCEEEEEECCHHEECCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
RLAHEIKNPLTPIQLSAERLQMKLADKLSPSDADVLKRGATTIVNQVAAMKQMVDNFRDY
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTPPAVLAHLQLNDLVSEVLTLYGIEEGKGAIQVELAALPAIRGDATQLRQVIHNLLQN
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
AQDAVADLEHPRVLLETRTVEYGDPDAEGKVRVAVRLTVSDNGPGFSARILTRAFEPYVT
HHHHHHHCCCCEEEEEECEEECCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCEE
TKAKGTGLGLAMVKKIVDEHGARIDIRNRMKAGDVIEGAQISILFLQLADDAATPGTGPR
CCCCCCCHHHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
PAHGGASQGKTKATVQTRAA
CCCCCCCCCCCEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]