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The map label for this gene is ybcQ2 [H]

Identifier: 91214052

GI number: 91214052

Start: 5002533

End: 5002898

Strand: Direct

Name: ybcQ2 [H]

Synonym: UTI89_C5107

Alternate gene names: 91214052

Gene position: 5002533-5002898 (Clockwise)

Preceding gene: 91214051

Following gene: 91214054

Centisome position: 98.75

GC content: 44.26

Gene sequence:

>366_bases
ATGCGTGATATTCAAATGGTTCTTGAACATTGGGGGGCATGGGTGGCAAATAATCACGAGGATGTCACCTGGTCGTCTAT
TGCTGCAGGATTTAAAGGACTAATCCCTTCAAAAGTAAAATCCCGCCCGCAATGTTGTGACGATGATGCGATGATCATTT
GTGGGTGCATGGCTCGCTTGAAAAAGAACAACAGCGATTTGCACGATTTATTAGTGGGTTATTATGTAGGTGGTATGACG
TTTATGGCGCTTGCCCGTAAACATGGGCGTTCTGATTGCTGGGTTGGGCGTTTATTGCAAAAGGCTGAAGGTGTAGTTGA
TGGCATGTTAATGATGTTAGAAATTGAGCTAGAGATGGATCGTTAG

Upstream 100 bases:

>100_bases
CATTTGAAGAGAAGTATGGCTCCCAGCTGGAGCTGATATTTCGTTTTATCGATCGTGCGCTGGCAATTGGCGTGCTGGCC
TGATTTTGTGGAGAAAGTTG

Downstream 100 bases:

>100_bases
AAGACCTCTTATTGAGGGGGTAATTGAATCAGTTTAATGTGTGGGGAGTCGATTTATTCTCCCCATTTTATTTAATTAAT
TTACTTAAGGTTTTAATTCA

Product: putative Q protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MRDIQMVLEHWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVGYYVGGMT
FMALARKHGRSDCWVGRLLQKAEGVVDGMLMMLEIELEMDR

Sequences:

>Translated_121_residues
MRDIQMVLEHWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVGYYVGGMT
FMALARKHGRSDCWVGRLLQKAEGVVDGMLMMLEIELEMDR
>Mature_121_residues
MRDIQMVLEHWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVGYYVGGMT
FMALARKHGRSDCWVGRLLQKAEGVVDGMLMMLEIELEMDR

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=120, Percent_Identity=83.3333333333333, Blast_Score=207, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 13632; Mature: 13632

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
8.3 %Met     (Translated Protein)
12.4 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
8.3 %Met     (Mature Protein)
12.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDIQMVLEHWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARL
CCHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHH
KKNNSDLHDLLVGYYVGGMTFMALARKHGRSDCWVGRLLQKAEGVVDGMLMMLEIELEMD
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECC
R
C
>Mature Secondary Structure
MRDIQMVLEHWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARL
CCHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHH
KKNNSDLHDLLVGYYVGGMTFMALARKHGRSDCWVGRLLQKAEGVVDGMLMMLEIELEMD
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]