Click here to switch to the map view.

The map label for this gene is ibgR [H]

Identifier: 91213981

GI number: 91213981

Start: 4934895

End: 4936844

Strand: Direct

Name: ibgR [H]

Synonym: UTI89_C5033

Alternate gene names: 91213981

Gene position: 4934895-4936844 (Clockwise)

Preceding gene: 91213976

Following gene: 91213983

Centisome position: 97.42

GC content: 39.59

Gene sequence:

>1950_bases
ATGGATATTATTATAATGAATAAAGAGTCGTATCATAATGATCTAAAAAATAAATGGAAAATGTTTGTTAAGCATGGTTG
GGTCGCGACAAATTCGACTAATCATGTGATGCTGAGGTCATGGCAAAAATGTCTCAAGCATTGTGACCCTCGCCACTGGA
ACACGCCTGTCAAAGCTTCCGGGCAAACATTGCAGACGATTTTTTCTCGTAACGAAGAGTTTATTAGAATTTCACAAAGA
GTTGTTGAAGACCATTTCACCCTGGCTGGTGACGACCGGTTGGCATTTTTGATCATTGATCCACACGGCTGGGTTCTATC
GTTGAATGCAGCAGGCGATTATTCCAGTCAATTGCGAGAGTTAGGAATTGAATCTGGTATGTCATGGGCCGAAGATGGCA
TTGGAACCAATGTATATAGTCTTTGTCGGGAAACAAATTTATATACACAACTGGAAGGAGCAGAACATTTTAGTGAACAG
CTACATTGTTATGCGATGAGCGCTGCTCCGGTCATTGATTATTATGGTAATATACATGGATACATTGTATGTATAATTGA
AACCACCGCCGAGCTTGTTAAATTAAAAACATCATATTCATGTGCAACAGAAATCGCTAATTATATCTATATTGAGAATG
AACAAAAGTTAATAAACAAAGTACTTTGCCAGCATAATGCTGTGATTGAATGTATGGATGACGGTTTTATTTGTTGGAAT
AGTCATTCTTTAATTACGATGGTTAATTCTCAAGCACAAACATTACTGAATATTGATAAAGAAAGTTTAATTGGTCAGAA
CATCCGAAAAGGATTCGTATTTCCGCCGATTTTGAATGAGGCAATTACACAACGAAACAAACTATCGCAAAAGCAAATTG
TCCTCGAATGCCGTGGCGAATTTATTGAACTTATGGTTACCCTTCGCCCGTTAAGCGATGGTTCGTTTTTGCTTTTTCTT
CATCCATTAGACAAAATCAGGAAAATAGCCCAACAGCAAATAAGCACTAATGCAAATTTTACCTTTGACAGTTTACATGC
GGCTTCAGGTGGTATGAAGCAGGTATTACTTATCGCTCGCCGGGCAATTAAATCCATCTCTCCGATTTTGATCAATGGCG
AAGAAGGTGTGGGAAAATTGAGTTTGGCGATGGCAATACATAATGAGAGCGAGCAACGTGATGGGCCATTTATTTCTGTA
GATTGTCAGATGCTATCACCAGAAAATATCTTACACGAACTTCTTGGCTCTGATGTTGGCCCTTCGCCATCGAAATTTGA
ACTGGCTCATAATGGCACCTTATATCTGGATAAAGTCGAATATCTATCAGGGGAAGTTCAGAGTGTTTTATTGAAAGTAT
TGAAAACGGGGCTTGTTACTCGCTCAGACAGCCATCGTTTGATCCCCGTACGCTTTCGTCTGATTACATGTACCAGTAGT
TCTTTACGTGAGTACGTGCAACAAGGGGCTTTTAGCCGACAGCTATATTATGAGATCTCCATGAATGAAATTGAAATTCC
GCCATTGCGCAAACGTCGTGAAGATCTCAAGCAAATGATTGACGATATTATTGATAAGTATCAGGAGCGCACGCGAAAAA
AAATGACAATCACGCCTGACGCAAATTCAGTTCTGCTTGAGTACCGTTGGCCTGGGAACATCTCCGAGTTCAAAAATCGA
ATGGAGAAGGTATTTATTAACTGCAATCGACTTGTACTCGGGTTAGAGAATATTCCTCTGGATATCCGACAAAATAACAG
TAGTGGCGACGATGATATCCCTCATCTTACTTCACTGGCAGAATTGGAGATGCAAGCTATTGAGCATACATGTCGTGTCT
GCGAATGGAATCTAACTAAAGCAGCTGAAGTATTAAAAATTGGTCGTACAACATTATGGCGCAAACTTAAGATCTATAAT
CTCTATCCAAATGTTGAGCATGCAGATTGA

Upstream 100 bases:

>100_bases
TTGATAAGGTCTGTTTTTGTAATGATCCAGGCTAGATATTATTGCGTTTGATCAAGCTTACTGGCATAGCATTCTGATAC
AAGTTCTGAAAATGACTTGA

Downstream 100 bases:

>100_bases
TGCTTTTCAAATTGAAAGAATTTTAATATCGCAGTGTTTCATTTTGATGCAGTGCTTTAATGGTATTGAAATATTGTGAT
GTGCTCCATAAATGCCAATG

Product: DNA-binding transcriptional regulator DhaR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 649

Protein sequence:

>649_residues
MDIIIMNKESYHNDLKNKWKMFVKHGWVATNSTNHVMLRSWQKCLKHCDPRHWNTPVKASGQTLQTIFSRNEEFIRISQR
VVEDHFTLAGDDRLAFLIIDPHGWVLSLNAAGDYSSQLRELGIESGMSWAEDGIGTNVYSLCRETNLYTQLEGAEHFSEQ
LHCYAMSAAPVIDYYGNIHGYIVCIIETTAELVKLKTSYSCATEIANYIYIENEQKLINKVLCQHNAVIECMDDGFICWN
SHSLITMVNSQAQTLLNIDKESLIGQNIRKGFVFPPILNEAITQRNKLSQKQIVLECRGEFIELMVTLRPLSDGSFLLFL
HPLDKIRKIAQQQISTNANFTFDSLHAASGGMKQVLLIARRAIKSISPILINGEEGVGKLSLAMAIHNESEQRDGPFISV
DCQMLSPENILHELLGSDVGPSPSKFELAHNGTLYLDKVEYLSGEVQSVLLKVLKTGLVTRSDSHRLIPVRFRLITCTSS
SLREYVQQGAFSRQLYYEISMNEIEIPPLRKRREDLKQMIDDIIDKYQERTRKKMTITPDANSVLLEYRWPGNISEFKNR
MEKVFINCNRLVLGLENIPLDIRQNNSSGDDDIPHLTSLAELEMQAIEHTCRVCEWNLTKAAEVLKIGRTTLWRKLKIYN
LYPNVEHAD

Sequences:

>Translated_649_residues
MDIIIMNKESYHNDLKNKWKMFVKHGWVATNSTNHVMLRSWQKCLKHCDPRHWNTPVKASGQTLQTIFSRNEEFIRISQR
VVEDHFTLAGDDRLAFLIIDPHGWVLSLNAAGDYSSQLRELGIESGMSWAEDGIGTNVYSLCRETNLYTQLEGAEHFSEQ
LHCYAMSAAPVIDYYGNIHGYIVCIIETTAELVKLKTSYSCATEIANYIYIENEQKLINKVLCQHNAVIECMDDGFICWN
SHSLITMVNSQAQTLLNIDKESLIGQNIRKGFVFPPILNEAITQRNKLSQKQIVLECRGEFIELMVTLRPLSDGSFLLFL
HPLDKIRKIAQQQISTNANFTFDSLHAASGGMKQVLLIARRAIKSISPILINGEEGVGKLSLAMAIHNESEQRDGPFISV
DCQMLSPENILHELLGSDVGPSPSKFELAHNGTLYLDKVEYLSGEVQSVLLKVLKTGLVTRSDSHRLIPVRFRLITCTSS
SLREYVQQGAFSRQLYYEISMNEIEIPPLRKRREDLKQMIDDIIDKYQERTRKKMTITPDANSVLLEYRWPGNISEFKNR
MEKVFINCNRLVLGLENIPLDIRQNNSSGDDDIPHLTSLAELEMQAIEHTCRVCEWNLTKAAEVLKIGRTTLWRKLKIYN
LYPNVEHAD
>Mature_649_residues
MDIIIMNKESYHNDLKNKWKMFVKHGWVATNSTNHVMLRSWQKCLKHCDPRHWNTPVKASGQTLQTIFSRNEEFIRISQR
VVEDHFTLAGDDRLAFLIIDPHGWVLSLNAAGDYSSQLRELGIESGMSWAEDGIGTNVYSLCRETNLYTQLEGAEHFSEQ
LHCYAMSAAPVIDYYGNIHGYIVCIIETTAELVKLKTSYSCATEIANYIYIENEQKLINKVLCQHNAVIECMDDGFICWN
SHSLITMVNSQAQTLLNIDKESLIGQNIRKGFVFPPILNEAITQRNKLSQKQIVLECRGEFIELMVTLRPLSDGSFLLFL
HPLDKIRKIAQQQISTNANFTFDSLHAASGGMKQVLLIARRAIKSISPILINGEEGVGKLSLAMAIHNESEQRDGPFISV
DCQMLSPENILHELLGSDVGPSPSKFELAHNGTLYLDKVEYLSGEVQSVLLKVLKTGLVTRSDSHRLIPVRFRLITCTSS
SLREYVQQGAFSRQLYYEISMNEIEIPPLRKRREDLKQMIDDIIDKYQERTRKKMTITPDANSVLLEYRWPGNISEFKNR
MEKVFINCNRLVLGLENIPLDIRQNNSSGDDDIPHLTSLAELEMQAIEHTCRVCEWNLTKAAEVLKIGRTTLWRKLKIYN
LYPNVEHAD

Specific function: Transcriptional activator of the glycerol utilization dha operon [H]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87081858, Length=614, Percent_Identity=32.5732899022801, Blast_Score=353, Evalue=3e-98,
Organism=Escherichia coli, GI1788550, Length=297, Percent_Identity=32.3232323232323, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1790437, Length=287, Percent_Identity=32.0557491289199, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI1786524, Length=318, Percent_Identity=32.7044025157233, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1789233, Length=439, Percent_Identity=26.879271070615, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87082117, Length=244, Percent_Identity=32.7868852459016, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1787583, Length=259, Percent_Identity=28.5714285714286, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1790299, Length=339, Percent_Identity=26.2536873156342, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081872, Length=282, Percent_Identity=30.8510638297872, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788905, Length=303, Percent_Identity=28.0528052805281, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI87082152, Length=207, Percent_Identity=31.8840579710145, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI1789087, Length=319, Percent_Identity=28.2131661442006, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1789828, Length=234, Percent_Identity=28.6324786324786, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01590 GAF; PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 74097; Mature: 74097

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIIIMNKESYHNDLKNKWKMFVKHGWVATNSTNHVMLRSWQKCLKHCDPRHWNTPVKAS
CEEEEECCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
GQTLQTIFSRNEEFIRISQRVVEDHFTLAGDDRLAFLIIDPHGWVLSLNAAGDYSSQLRE
CHHHHHHHHCCHHHHHHHHHHHHHHCEEECCCEEEEEEECCCCEEEEEECCCCHHHHHHH
LGIESGMSWAEDGIGTNVYSLCRETNLYTQLEGAEHFSEQLHCYAMSAAPVIDYYGNIHG
HHHHCCCCHHHCCCCHHHHHHHHHCCCCEEECCHHHHHHHHEEEEECCCCHHHHCCCCCE
YIVCIIETTAELVKLKTSYSCATEIANYIYIENEQKLINKVLCQHNAVIECMDDGFICWN
EEEEEEECCHHHHHHHCCHHHHHHHHHEEEECCHHHHHHHHHHCCCCEEEEECCCEEEEC
SHSLITMVNSQAQTLLNIDKESLIGQNIRKGFVFPPILNEAITQRNKLSQKQIVLECRGE
CCCEEEEECHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHH
FIELMVTLRPLSDGSFLLFLHPLDKIRKIAQQQISTNANFTFDSLHAASGGMKQVLLIAR
HHEEHHEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEHHHHHCCCCHHHHHHHHH
RAIKSISPILINGEEGVGKLSLAMAIHNESEQRDGPFISVDCQMLSPENILHELLGSDVG
HHHHCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCC
PSPSKFELAHNGTLYLDKVEYLSGEVQSVLLKVLKTGLVTRSDSHRLIPVRFRLITCTSS
CCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHCEECCCCCCEEEEEEEEEEECCH
SLREYVQQGAFSRQLYYEISMNEIEIPPLRKRREDLKQMIDDIIDKYQERTRKKMTITPD
HHHHHHHCCCCCEEEEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
ANSVLLEYRWPGNISEFKNRMEKVFINCNRLVLGLENIPLDIRQNNSSGDDDIPHLTSLA
CCCEEEEEECCCCHHHHHHHHHHHHEECCEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
ELEMQAIEHTCRVCEWNLTKAAEVLKIGRTTLWRKLKIYNLYPNVEHAD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCC
>Mature Secondary Structure
MDIIIMNKESYHNDLKNKWKMFVKHGWVATNSTNHVMLRSWQKCLKHCDPRHWNTPVKAS
CEEEEECCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
GQTLQTIFSRNEEFIRISQRVVEDHFTLAGDDRLAFLIIDPHGWVLSLNAAGDYSSQLRE
CHHHHHHHHCCHHHHHHHHHHHHHHCEEECCCEEEEEEECCCCEEEEEECCCCHHHHHHH
LGIESGMSWAEDGIGTNVYSLCRETNLYTQLEGAEHFSEQLHCYAMSAAPVIDYYGNIHG
HHHHCCCCHHHCCCCHHHHHHHHHCCCCEEECCHHHHHHHHEEEEECCCCHHHHCCCCCE
YIVCIIETTAELVKLKTSYSCATEIANYIYIENEQKLINKVLCQHNAVIECMDDGFICWN
EEEEEEECCHHHHHHHCCHHHHHHHHHEEEECCHHHHHHHHHHCCCCEEEEECCCEEEEC
SHSLITMVNSQAQTLLNIDKESLIGQNIRKGFVFPPILNEAITQRNKLSQKQIVLECRGE
CCCEEEEECHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHH
FIELMVTLRPLSDGSFLLFLHPLDKIRKIAQQQISTNANFTFDSLHAASGGMKQVLLIAR
HHEEHHEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEHHHHHCCCCHHHHHHHHH
RAIKSISPILINGEEGVGKLSLAMAIHNESEQRDGPFISVDCQMLSPENILHELLGSDVG
HHHHCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCC
PSPSKFELAHNGTLYLDKVEYLSGEVQSVLLKVLKTGLVTRSDSHRLIPVRFRLITCTSS
CCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHCEECCCCCCEEEEEEEEEEECCH
SLREYVQQGAFSRQLYYEISMNEIEIPPLRKRREDLKQMIDDIIDKYQERTRKKMTITPD
HHHHHHHCCCCCEEEEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
ANSVLLEYRWPGNISEFKNRMEKVFINCNRLVLGLENIPLDIRQNNSSGDDDIPHLTSLA
CCCEEEEEECCCCHHHHHHHHHHHHEECCEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
ELEMQAIEHTCRVCEWNLTKAAEVLKIGRTTLWRKLKIYNLYPNVEHAD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA