| Definition | Escherichia coli UTI89 chromosome, complete genome. |
|---|---|
| Accession | NC_007946 |
| Length | 5,065,741 |
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The map label for this gene is uidR [C]
Identifier: 91213859
GI number: 91213859
Start: 4809697
End: 4810536
Strand: Direct
Name: uidR [C]
Synonym: UTI89_C4911
Alternate gene names: 91213859
Gene position: 4809697-4810536 (Clockwise)
Preceding gene: 91213847
Following gene: 91213860
Centisome position: 94.95
GC content: 48.33
Gene sequence:
>840_bases ATGACTGCTGTTGCTATAAAATGTTTCATATATTCTCCATCAGTTCTTCTGGGAATCTGTGGGCAGCATATAGCGCTCAT ACTATGCTGCTGTTTCAATATTAGCGGCAGACGTCAGCCTTACCGCACTACTTATTGGATAAGAATATCAAAAGTGACCG CGAAGTCAATTTTATCACAACACAGAAGGCCACTATTTATGCCAGCAAATATGAATCGTCCTCATCATGCACGAAAGACT CGTAGTTGCAGCCCGGAAAAAACTGCCAGGACACGACAGCAGATAGCCCGGGCAGCACTTGAGGAGTTCTCTGCACAAGG GTTCGCTCGCGCCAGCATCAGCAATATCAGCAAGCGCGCAGGAGTAGCTAAAGGCACGGTATATAACTACTTCCCGACAA AGGAATTATTGTTTGAAGCGGTTCTGAAAGAGTTCATTGCTACCGTCCGTACTGAACTGGAATCTTCCCCCCGCCGCAAC GGGGAAACCGTAAAAGCCTATCTGTTGAGAGTGATGTTACCTGCCATCAGGAAAATTGACGACGCATCAACAGGCAGAGC CAGAATAGCCCACCTGGTTATGACAGAAGGGAGCCGGTTCCCGGTAATCGCTCAGGCTTATTTACGGGAAATACATCAGC CACTACAGCAAGCCATGACCCAACTGATTCAGGAGGCAGCATCAGCCGGAGAGTTAAAAGCAGAGCAACTGCTCTGCTTC CCCTGTTTATTGCTGGCTCCAAACTGGTTTGGCATGGTGTATAACGAAGTTCTGAACCCGGCAGCACCGGTCAGTACAGG CGATCTTTTTGAAGCCGGAATTGGTGCTTTTTTCCGATAG
Upstream 100 bases:
>100_bases GTATTTGAATGTACCGCCGGATTGTTCAGGTGAGCTTTCCTTCTGTGCTGCCGACGATGAGGCAGCCAGAGCATTAGAGC CGAAAAGAAGGGATGATGCC
Downstream 100 bases:
>100_bases GCACATAACTGTCAGTATTATGACCATGCCGTCAGGAGGAGGTATACCAGTGATACCCTACCATGACCCGGTAACGTCTC CTGGCTGCCTTAAACCTGAA
Product: UidR transriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Tetr Family; Regulatory Protein TetR; Transcriptional Regulatory Protein; Transcription Regulator Protein; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; TetR Family Regulatory Protein
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MTAVAIKCFIYSPSVLLGICGQHIALILCCCFNISGRRQPYRTTYWIRISKVTAKSILSQHRRPLFMPANMNRPHHARKT RSCSPEKTARTRQQIARAALEEFSAQGFARASISNISKRAGVAKGTVYNYFPTKELLFEAVLKEFIATVRTELESSPRRN GETVKAYLLRVMLPAIRKIDDASTGRARIAHLVMTEGSRFPVIAQAYLREIHQPLQQAMTQLIQEAASAGELKAEQLLCF PCLLLAPNWFGMVYNEVLNPAAPVSTGDLFEAGIGAFFR
Sequences:
>Translated_279_residues MTAVAIKCFIYSPSVLLGICGQHIALILCCCFNISGRRQPYRTTYWIRISKVTAKSILSQHRRPLFMPANMNRPHHARKT RSCSPEKTARTRQQIARAALEEFSAQGFARASISNISKRAGVAKGTVYNYFPTKELLFEAVLKEFIATVRTELESSPRRN GETVKAYLLRVMLPAIRKIDDASTGRARIAHLVMTEGSRFPVIAQAYLREIHQPLQQAMTQLIQEAASAGELKAEQLLCF PCLLLAPNWFGMVYNEVLNPAAPVSTGDLFEAGIGAFFR >Mature_278_residues TAVAIKCFIYSPSVLLGICGQHIALILCCCFNISGRRQPYRTTYWIRISKVTAKSILSQHRRPLFMPANMNRPHHARKTR SCSPEKTARTRQQIARAALEEFSAQGFARASISNISKRAGVAKGTVYNYFPTKELLFEAVLKEFIATVRTELESSPRRNG ETVKAYLLRVMLPAIRKIDDASTGRARIAHLVMTEGSRFPVIAQAYLREIHQPLQQAMTQLIQEAASAGELKAEQLLCFP CLLLAPNWFGMVYNEVLNPAAPVSTGDLFEAGIGAFFR
Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]
COG id: COG1309
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31164; Mature: 31033
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVAIKCFIYSPSVLLGICGQHIALILCCCFNISGRRQPYRTTYWIRISKVTAKSILSQ CCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHH HRRPLFMPANMNRPHHARKTRSCSPEKTARTRQQIARAALEEFSAQGFARASISNISKRA CCCCEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC GVAKGTVYNYFPTKELLFEAVLKEFIATVRTELESSPRRNGETVKAYLLRVMLPAIRKID CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC DASTGRARIAHLVMTEGSRFPVIAQAYLREIHQPLQQAMTQLIQEAASAGELKAEQLLCF CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH PCLLLAPNWFGMVYNEVLNPAAPVSTGDLFEAGIGAFFR HHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure TAVAIKCFIYSPSVLLGICGQHIALILCCCFNISGRRQPYRTTYWIRISKVTAKSILSQ CEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHH HRRPLFMPANMNRPHHARKTRSCSPEKTARTRQQIARAALEEFSAQGFARASISNISKRA CCCCEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC GVAKGTVYNYFPTKELLFEAVLKEFIATVRTELESSPRRNGETVKAYLLRVMLPAIRKID CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC DASTGRARIAHLVMTEGSRFPVIAQAYLREIHQPLQQAMTQLIQEAASAGELKAEQLLCF CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH PCLLLAPNWFGMVYNEVLNPAAPVSTGDLFEAGIGAFFR HHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA