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The map label for this gene is orn [H]

Identifier: 91213714

GI number: 91213714

Start: 4663299

End: 4663961

Strand: Direct

Name: orn [H]

Synonym: UTI89_C4762

Alternate gene names: 91213714

Gene position: 4663299-4663961 (Clockwise)

Preceding gene: 91213710

Following gene: 91213716

Centisome position: 92.06

GC content: 51.73

Gene sequence:

>663_bases
TTGGAGAGTTTATTTTTACTCAATCGTACAGACTCCTGGTCGCCCCTGATGGGCAAAACATCTATGATACACGCAATTGT
GGATCAATATAGTCACTGTGAATGGGTGGAAAATAGCATGAGTGCCAATGAAAACAACCTGATTTGGATCGATCTTGAGA
TGACCGGTCTGGATCCCGAGCGCGATCGCATTATTGAGATTGCCACGCTGGTGACCGATGCCAACCTGAATATTCTGGCA
GAAGGGCCGACCATTGCAGTACATCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCACCCATACCGC
CAGCGGGCTGGTAGAGCGTGTGAAAGCGAGCACGATGGGCGATCGTGAAGCTGAACTGGCAACGCTCGAATTCTTAAAAC
AGTGGGTGCCTGCGGGAAAATCGCCGATTTGTGGTAACAGCATCGGTCAGGACCGTCGCTTCCTGTTTAAATACATGCCG
GAGCTGGAAGCCTACTTCCACTACCGCTATCTCGATGTTAGCACCCTGAAAGAGCTGGCGCGCCGCTGGAAGCCGGAAAT
TCTTGACGGCTTTACCAAGCAGGGGACGCATCAGGCGATGGATGATATCCGTGAATCGGTGGCGGAGTTGGCTTACTACC
GCGAGCATTTTATCAAGCTGTAA

Upstream 100 bases:

>100_bases
TTCATCAGGCTCGCCAAACAGATTGTCGTCGTAGTCGGGCTTCTCCTTAGACGTTTTAAGACGACGCTGGTGATTGGCGT
TCACGCGGCGCTGCTGGCCT

Downstream 100 bases:

>100_bases
AATTTTTCCTGGTCACGTAAGCGCCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAA
TTTCAGCACTTGAGATAAAA

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MESLFLLNRTDSWSPLMGKTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILA
EGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMP
ELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL

Sequences:

>Translated_220_residues
MESLFLLNRTDSWSPLMGKTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILA
EGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMP
ELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL
>Mature_220_residues
MESLFLLNRTDSWSPLMGKTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILA
EGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMP
ELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=184, Percent_Identity=48.3695652173913, Blast_Score=183, Evalue=9e-47,
Organism=Escherichia coli, GI87082382, Length=181, Percent_Identity=100, Blast_Score=378, Evalue=1e-106,
Organism=Caenorhabditis elegans, GI17557752, Length=177, Percent_Identity=49.7175141242938, Blast_Score=167, Evalue=4e-42,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=35.1648351648352, Blast_Score=113, Evalue=3e-26,
Organism=Drosophila melanogaster, GI21355135, Length=183, Percent_Identity=44.8087431693989, Blast_Score=183, Evalue=9e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 25355; Mature: 25355

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLFLLNRTDSWSPLMGKTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPE
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC
RDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG
HHHHHHHHHHEECCCCEEEECCCEEEEECCCCCEEEEECCCCEEHHHHHHHHHHHHHCCC
DREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHH
RRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL
HHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MESLFLLNRTDSWSPLMGKTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPE
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC
RDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG
HHHHHHHHHHEECCCCEEEECCCEEEEECCCCCEEEEECCCCEEHHHHHHHHHHHHHCCC
DREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHH
RRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL
HHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA