| Definition | Escherichia coli UTI89 chromosome, complete genome. |
|---|---|
| Accession | NC_007946 |
| Length | 5,065,741 |
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The map label for this gene is yphB [C]
Identifier: 91213425
GI number: 91213425
Start: 4353905
End: 4354849
Strand: Direct
Name: yphB [C]
Synonym: UTI89_C4468
Alternate gene names: 91213425
Gene position: 4353905-4354849 (Clockwise)
Preceding gene: 91213424
Following gene: 91213426
Centisome position: 85.95
GC content: 49.52
Gene sequence:
>945_bases TTGAGCCAACCGATGAACAAGAAACCGCTTCTTACCGCTACATCAGGGAACAATCTCATGAAAACTGAACGAAAAAACGA GCATTACCTGGCGCTACAACAGGCGTTTGACGCGCCATGGCCTGGGCCTGTAGGAGAGTTAGTGACGCTGGAAAAAGGCA ATATTCACCTGCAGATTTATCCGCATGATGGTGCCAGGATAACCTCGTTAAAGGCATTTGGTTCTGAAGTATTACGCCAA TGGCAGCCGCAGCGCAGAGCTTTTCAGTATGGCTGTTTCCCAATGGTGCCGTGGGCAGGGCGACTGGGGAATGCGACGCT GAATGCTGGTGGGCAATGTTATTCTTTACCCGCCAATAAACCACCACATGCGTTGCATGGTATGGCTTGTTACTCAACGT GGGAAATCATCGACAAAACAGCAGATTCCCTGACTTTACGTATGCCCCTGGCTTCACCGTGGCCCTGGCAAGGGGAAGTG ATTCAGACTTTTTTGCTGGAGAACGATGCGCTGGTTTTGCAACTGGAAGTCCATTCATATGCCGATACATTCCCGGCCTC CGCAGGCTGGCATCCGTGGTTTGCGAAAAAGCTGACTCCGCAAAATACAGAATCGTTGCAGGTGCTTTTTGATGCGGACT GGCAAGAAGAAGCGGGTAGTGATGAACTGCCAACTGGAAATCGTATCTCTCCTCAAGTTGGTCCCTGGGATGACTGTTTT GGTTTTTATGACGGGGTGAAGGTTAAGTTACTGTGGCCTGGTAAACTCGCGATGACCATGACCTCTTCTGCAAACAGTCT GGTGGTATTTGATAAACAGCCCGATGCCACCTGTATTAACCCGCTGACTCAGGCACCTAACGCAATAAATCTAACGCCGG AATTTGTGACACCAGATAAGCCGCTGGTCATCGAAACTCGTTGGCAATTTACACCTGAATCTTAA
Upstream 100 bases:
>100_bases ATCGCCTCAAGTTTGCTGGCGCTAGGGGGAGGAAAACCGTGGTATGTCGCTCTGTTTTTATTTGCTGTCTCAGTTCTTTC CTTTGTTTGCGTCTGGCTGA
Downstream 100 bases:
>100_bases CCATTCATCTATTGCGAAAAAGCCAGTGAAATTACTCTGCTTTTTCGCAATCAGCATCACAAGATTACCCTTATTGCCAC ATAGCCAAACCCACCCTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Aldose-1-Epimerase; Galactose Mutarotase-Like Protein; Epimerase; Aldose 1-Epimerase Subfamily; Aldose 1-Epimerase Family Protein
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MSQPMNKKPLLTATSGNNLMKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHDGARITSLKAFGSEVLRQ WQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANKPPHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEV IQTFLLENDALVLQLEVHSYADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQVGPWDDCF GFYDGVKVKLLWPGKLAMTMTSSANSLVVFDKQPDATCINPLTQAPNAINLTPEFVTPDKPLVIETRWQFTPES
Sequences:
>Translated_314_residues MSQPMNKKPLLTATSGNNLMKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHDGARITSLKAFGSEVLRQ WQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANKPPHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEV IQTFLLENDALVLQLEVHSYADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQVGPWDDCF GFYDGVKVKLLWPGKLAMTMTSSANSLVVFDKQPDATCINPLTQAPNAINLTPEFVTPDKPLVIETRWQFTPES >Mature_313_residues SQPMNKKPLLTATSGNNLMKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHDGARITSLKAFGSEVLRQW QPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANKPPHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVI QTFLLENDALVLQLEVHSYADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQVGPWDDCFG FYDGVKVKLLWPGKLAMTMTSSANSLVVFDKQPDATCINPLTQAPNAINLTPEFVTPDKPLVIETRWQFTPES
Specific function: Unknown
COG id: COG2017
COG function: function code G; Galactose mutarotase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788894, Length=263, Percent_Identity=26.615969581749, Blast_Score=62, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35034; Mature: 34903
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPMNKKPLLTATSGNNLMKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIY CCCCCCCCCEEEEECCCCEEECCCCCCCEEEEHHHHCCCCCCCCCCEEEEECCCEEEEEE PHDGARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANK ECCCCEEEHHHHHHHHHHHHCCCHHHHHCCCCEECCCCCCCCCCEEECCCCEEEECCCCC PPHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHSY CCHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHEEEEECCCEEEEEEEECCC ADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQVGPWDDCF CCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHH GFYDGVKVKLLWPGKLAMTMTSSANSLVVFDKQPDATCINPLTQAPNAINLTPEFVTPDK HHCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCHHHCHHHCCCCEEECCCCCCCCCC PLVIETRWQFTPES CEEEEEEECCCCCC >Mature Secondary Structure SQPMNKKPLLTATSGNNLMKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIY CCCCCCCCEEEEECCCCEEECCCCCCCEEEEHHHHCCCCCCCCCCEEEEECCCEEEEEE PHDGARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANK ECCCCEEEHHHHHHHHHHHHCCCHHHHHCCCCEECCCCCCCCCCEEECCCCEEEECCCCC PPHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHSY CCHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHEEEEECCCEEEEEEEECCC ADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQVGPWDDCF CCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHH GFYDGVKVKLLWPGKLAMTMTSSANSLVVFDKQPDATCINPLTQAPNAINLTPEFVTPDK HHCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCHHHCHHHCCCCEEECCCCCCCCCC PLVIETRWQFTPES CEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA