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The map label for this gene is sgbU [H]

Identifier: 91213099

GI number: 91213099

Start: 4015894

End: 4016787

Strand: Direct

Name: sgbU [H]

Synonym: UTI89_C4126

Alternate gene names: 91213099

Gene position: 4015894-4016787 (Clockwise)

Preceding gene: 91213098

Following gene: 91213100

Centisome position: 79.28

GC content: 54.36

Gene sequence:

>894_bases
ATGCGCAAATCGACTCCATCTGGGGAGGCAAGCGTGCGTAATCATCCGTTAGGCATTTATGAAAAAGCGCTGGCGAAAGA
TCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGTGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACG
AACGGTTGTCACGTCTTGACTGGAGCGCCGCACAACGTGCTTCGCTGGTCACTGCGATGATCGAAACGGGTGTTGCTATT
CCGTCAATGTGCCTGTCCGCACATCGTCGTTTTCCTTTTGGTAGCCGGGACGACGCCGTGCGCCAGCGGGCGCGGGAGAT
TATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGTACTATTCAACTGGCAGGTTACGACGTCTATTACGAGG
ATCATGACGAAGGCACCCAGCAACGGTTTGCTGAAGGGCTGGCGTGGGCGGTTGAACAGGCAGCGGCATCACAAGTCATG
CTGGCGGTGGAGATTATGGACACCGCGTTTATGAACTCTATCAGCAAATGGAAAAAGTGGGACGAAATGCTTGCGTCACC
GTGGTTCACCGTTTACCCGGACGTAGGCAATCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATCG
ACCGTATCGCCGCCATCCACCTGAAAGACACTCAACCCGTTACCGAACATAGCCCCGGACAGTTCCGCGATGTGCCGTTT
GGCGAAGGCTGTGTCGATTTTGTTGGCATCTTCAAAACGCTGCATGAGCTGAACTATCGCGGATCATTTCTGATTGAAAT
GTGGACCGAAAAAGCCAAAGAGCCGGTGCTGGAGATTATTCAGGCGCGGCGCTGGATTGAAGCGCGTATGCAGGAGGCCG
GATTTATATGTTAG

Upstream 100 bases:

>100_bases
GCTGACCTGCCGCTGTTTAAAGAGATCCGCGTGAAAGCGTTTATTGCCGGACGGGCGCTGGCAGGCGCAGCAAATCCGGC
GCAAGTGGCTGGCGATTTCC

Downstream 100 bases:

>100_bases
AGCAACTGAAAGCTGACGTGCTGGCGGCAAACCTGGCGCTTCCCGTTCATCATCTGGTGACGTTCACCTGGGGCAATGTC
AGCGCGATAGACGAAACGCG

Product: putative L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: L-xylulose-5-phosphate 3-epimerase [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MRKSTPSGEASVRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRASLVTAMIETGVAI
PSMCLSAHRRFPFGSRDDAVRQRAREIMSKAIRLARDLGIRTIQLAGYDVYYEDHDEGTQQRFAEGLAWAVEQAAASQVM
LAVEIMDTAFMNSISKWKKWDEMLASPWFTVYPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPF
GEGCVDFVGIFKTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC

Sequences:

>Translated_297_residues
MRKSTPSGEASVRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRASLVTAMIETGVAI
PSMCLSAHRRFPFGSRDDAVRQRAREIMSKAIRLARDLGIRTIQLAGYDVYYEDHDEGTQQRFAEGLAWAVEQAAASQVM
LAVEIMDTAFMNSISKWKKWDEMLASPWFTVYPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPF
GEGCVDFVGIFKTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC
>Mature_297_residues
MRKSTPSGEASVRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRASLVTAMIETGVAI
PSMCLSAHRRFPFGSRDDAVRQRAREIMSKAIRLARDLGIRTIQLAGYDVYYEDHDEGTQQRFAEGLAWAVEQAAASQVM
LAVEIMDTAFMNSISKWKKWDEMLASPWFTVYPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPF
GEGCVDFVGIFKTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC

Specific function: Catalyzes the isomerization of L-xylulose-5-phosphate to L-ribulose-5-phosphate (Potential). May be involved in the utilization of 2,3-diketo-L-gulonate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI87082294, Length=286, Percent_Identity=96.1538461538462, Blast_Score=572, Evalue=1e-164,
Organism=Escherichia coli, GI1790641, Length=281, Percent_Identity=59.0747330960854, Blast_Score=342, Evalue=1e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.1.3.22 [H]

Molecular weight: Translated: 33578; Mature: 33578

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSTPSGEASVRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLD
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHC
WSAAQRASLVTAMIETGVAIPSMCLSAHRRFPFGSRDDAVRQRAREIMSKAIRLARDLGI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
RTIQLAGYDVYYEDHDEGTQQRFAEGLAWAVEQAAASQVMLAVEIMDTAFMNSISKWKKW
EEEEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEMLASPWFTVYPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPF
HHHHHCCCEEECCCCCCCCCCCCCCCHHHHHCHHHHEEEEECCCCCCCCCCCCCCCCCCC
GEGCVDFVGIFKTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRKSTPSGEASVRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLD
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHC
WSAAQRASLVTAMIETGVAIPSMCLSAHRRFPFGSRDDAVRQRAREIMSKAIRLARDLGI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
RTIQLAGYDVYYEDHDEGTQQRFAEGLAWAVEQAAASQVMLAVEIMDTAFMNSISKWKKW
EEEEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEMLASPWFTVYPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPF
HHHHHCCCEEECCCCCCCCCCCCCCCHHHHHCHHHHEEEEECCCCCCCCCCCCCCCCCCC
GEGCVDFVGIFKTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]