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The map label for this gene is xylF [H]

Identifier: 91213080

GI number: 91213080

Start: 3996905

End: 3997975

Strand: Direct

Name: xylF [H]

Synonym: UTI89_C4107

Alternate gene names: 91213080

Gene position: 3996905-3997975 (Clockwise)

Preceding gene: 91213075

Following gene: 91213081

Centisome position: 78.9

GC content: 43.04

Gene sequence:

>1071_bases
TTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAGCTGTCCTCTAACTACAGAAGGCCCTACACCAT
GAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTTCTGCTTACCAACGTTGCGGCACACGCCAAAGAAGTCAAAA
TAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATTTTTGTGAAAAAAGCAGAATCTCTC
GGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATTAACCGGGG
TGTCGATGTTCTTGTCATTATTCCTTATAACGGTCAGGTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGTATTA
AAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAATGAAAAAGTCGGTGAA
CTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGC
CAAGCTGTTCCGCGCCGGGCAAATGAAAGTATTAAAACCTTATGTTGATTCCGGAAAAATTAAAGTCGTTGGTGACCAAT
GGGTTGATGGCTGGTTACCGGAAAACGCATTGAAAATTATGGAAAACGCGCTAACCGCCAATAATAACAAAATTGATGCT
GTAGTTGCCTCAAACGATGCCACCGCAGGAGGGGCAATTCAGGCATTAAGCGCGCAAGGTTTATCAGGGAAAGTAGCAAT
TTCCGGCCAGGATGCGGATCTTGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTA
CATTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAGCCAAAAGCGGATACCACACTGAAT
AATGGCCTGAAAGATGTTCCCTCCCGCCTGCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAGTTAA
AGACGGATTCCACAAAGAGAGCGAGCTGTAA

Upstream 100 bases:

>100_bases
ACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGT
AATTGTTTTCCCCTGTTTAG

Downstream 100 bases:

>100_bases
GCGTTACGCCCCGGCGCGGAGCGGGGGCGTGATTTCTCTCCATGCCGCGTGAATTGATTGGCTTAGGTGGAGTCGTTATG
CCTTATCTACTTGAAATGAA

Product: D-xylose transporter subunit XylF

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MLKIGYVYRGDCYLLKLSSNYRRPYTMKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESL
GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGE
LQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDA
VVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTTLN
NGLKDVPSRLLTPIDVNKNNIKDTVVKDGFHKESEL

Sequences:

>Translated_356_residues
MLKIGYVYRGDCYLLKLSSNYRRPYTMKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESL
GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGE
LQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDA
VVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTTLN
NGLKDVPSRLLTPIDVNKNNIKDTVVKDGFHKESEL
>Mature_356_residues
MLKIGYVYRGDCYLLKLSSNYRRPYTMKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESL
GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGE
LQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDA
VVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTTLN
NGLKDVPSRLLTPIDVNKNNIKDTVVKDGFHKESEL

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=330, Percent_Identity=99.6969696969697, Blast_Score=664, Evalue=0.0,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38876; Mature: 38876

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIGYVYRGDCYLLKLSSNYRRPYTMKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDD
CEEEEEEEECCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHH
LRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV
HHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHH
LSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGG
HHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHEEHEEEECCCCEEEECC
SPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDA
CCCCCCCEEEECCCEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEE
VVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTA
EEECCCCCCCCCEEEECCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHCCH
AEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVVKDGFHKESEL
HHEEEEECCCCCCCCCCHHHCCHHHHHHHHCCCEECCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLKIGYVYRGDCYLLKLSSNYRRPYTMKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDD
CEEEEEEEECCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHH
LRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV
HHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHH
LSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGG
HHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHEEHEEEECCCCEEEECC
SPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDA
CCCCCCCEEEECCCEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEE
VVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTA
EEECCCCCCCCCEEEECCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHCCH
AEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVVKDGFHKESEL
HHEEEEECCCCCCCCCCHHHCCHHHHHHHHCCCEECCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8581399; 9298646 [H]