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The map label for this gene is yedS [H]

Identifier: 91211183

GI number: 91211183

Start: 2060118

End: 2061263

Strand: Direct

Name: yedS [H]

Synonym: UTI89_C2165

Alternate gene names: 91211183

Gene position: 2060118-2061263 (Clockwise)

Preceding gene: 91211178

Following gene: 91211184

Centisome position: 40.67

GC content: 43.02

Gene sequence:

>1146_bases
ATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGG
CGCAGCAAATGCGGCTGAAATTTATAATAAAGATGGCAATAAAGTTGATTTCTACGGCAAGATGGTTGGCGAACGCATCT
GGTCAAATACTGATGATAATAACAGCGAAAACGAAGATACCTCCTATGCTCGTTTCGGTGTTAAAGGTGAAACCCAAATC
ACCAGCGAACTGACTGGTTTCGGTCAGTTTGAATACAACCTCGACGCCAGCAAACCTGAAGGTGAAAACCAGGAAAAAAC
CCGTTTAACCTTCGCCGGTTTGAAATATAACGAGTTAGGATCATTTGACTATGGCCGTAACTACGGTGTTGCTTATGATG
CCGCAGCTTATACCGATATGTTAGTTGAATGGGGTGGCGATTCCTGGGCTTCCGCTGACAACTTCATGAATGGTCGTACC
AACGGTGTTGCAACCTACCGTAACTATGATTTCTTTGGCCTGGTTGATGGTCTTGATTTTGCGATTCAGTACCAAGGCAA
AAACAGCAACCGTAGCACTAAGAAACAAAATGGTGACGGCTATGCGTTGTCTGTAGACTATAACATCAATGGTTTTGGTA
TCGTTGGTGCATATAGCAAATCTGATCGCACCAACGATCAAGTTGCCGATGGAAACGGTTCAAATGCTGAACTGTGGTCA
TTGGCTGCAAAGTATGACGCGAACAATGTCTACGCAGTTGTAATGTACGGTGAAACTCGTAATATGACTCCGGGTTCTAT
TGATACAGGTGTTGCCGATCGAGAAGGCAATACAATAATGCGTGATCAACTTATCAATGAAACCCAGAACTTTGAAGCGG
TTGTTCAGTATCAATTCGACTTTGGTCTGCGTCCGTCCTTAGGTTATGTGTATTCTAAAGGTAAAGATATCAAAGGTGTA
CCTGGACATAGATATGTTGACGCTGACCGTGTGAACTACATTGAAGTTGGTACCTGGTACTACTTCAATAAGAACATGAA
CGTTTATACTGCATACAAATTCAACATGCTGGATAAAGATGACGCCGCCATTACTGGCGCAGCAGCTGATGACCAGTTTG
CAGTTGGTATCGTCTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TAAATACATTTGTTACATGTAATCTTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGCTTTTTTTTGGATAA
CGGCACTTATTGATATATTC

Downstream 100 bases:

>100_bases
TCAGCCAACGCGCCGCGGCGTGTTACTGTAAAACTTAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTA
TTGGCATTTCATCTCGATCT

Product: outer membrane protein N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDNNSENEDTSYARFGVKGETQI
TSELTGFGQFEYNLDASKPEGENQEKTRLTFAGLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRT
NGVATYRNYDFFGLVDGLDFAIQYQGKNSNRSTKKQNGDGYALSVDYNINGFGIVGAYSKSDRTNDQVADGNGSNAELWS
LAAKYDANNVYAVVMYGETRNMTPGSIDTGVADREGNTIMRDQLINETQNFEAVVQYQFDFGLRPSLGYVYSKGKDIKGV
PGHRYVDADRVNYIEVGTWYYFNKNMNVYTAYKFNMLDKDDAAITGAAADDQFAVGIVYQF

Sequences:

>Translated_381_residues
MKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDNNSENEDTSYARFGVKGETQI
TSELTGFGQFEYNLDASKPEGENQEKTRLTFAGLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRT
NGVATYRNYDFFGLVDGLDFAIQYQGKNSNRSTKKQNGDGYALSVDYNINGFGIVGAYSKSDRTNDQVADGNGSNAELWS
LAAKYDANNVYAVVMYGETRNMTPGSIDTGVADREGNTIMRDQLINETQNFEAVVQYQFDFGLRPSLGYVYSKGKDIKGV
PGHRYVDADRVNYIEVGTWYYFNKNMNVYTAYKFNMLDKDDAAITGAAADDQFAVGIVYQF
>Mature_381_residues
MKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDNNSENEDTSYARFGVKGETQI
TSELTGFGQFEYNLDASKPEGENQEKTRLTFAGLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRT
NGVATYRNYDFFGLVDGLDFAIQYQGKNSNRSTKKQNGDGYALSVDYNINGFGIVGAYSKSDRTNDQVADGNGSNAELWS
LAAKYDANNVYAVVMYGETRNMTPGSIDTGVADREGNTIMRDQLINETQNFEAVVQYQFDFGLRPSLGYVYSKGKDIKGV
PGHRYVDADRVNYIEVGTWYYFNKNMNVYTAYKFNMLDKDDAAITGAAADDQFAVGIVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787160, Length=379, Percent_Identity=56.4643799472295, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI1786436, Length=376, Percent_Identity=54.2553191489362, Blast_Score=370, Evalue=1e-104,
Organism=Escherichia coli, GI1788544, Length=393, Percent_Identity=51.9083969465649, Blast_Score=350, Evalue=1e-97,
Organism=Escherichia coli, GI1787641, Length=393, Percent_Identity=53.6895674300254, Blast_Score=348, Evalue=2e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42493; Mature: 42493

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDN
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEHHHHHHHHHHCCCCCC
NSENEDTSYARFGVKGETQITSELTGFGQFEYNLDASKPEGENQEKTRLTFAGLKYNELG
CCCCCCCCEEEECCCCCCEEHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEECCEECCCC
SFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRTNGVATYRNYDFFGLVDGLDF
CCCCCCCCCEEECHHHHHHHHEEECCCCCCCHHHCCCCCCCCEEEEECCCEEEEECCCEE
AIQYQGKNSNRSTKKQNGDGYALSVDYNINGFGIVGAYSKSDRTNDQVADGNGSNAELWS
EEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEE
LAAKYDANNVYAVVMYGETRNMTPGSIDTGVADREGNTIMRDQLINETQNFEAVVQYQFD
EEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCEEEEEEEEC
FGLRPSLGYVYSKGKDIKGVPGHRYVDADRVNYIEVGTWYYFNKNMNVYTAYKFNMLDKD
CCCCCCCCEEEECCCCCCCCCCCEEECCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCC
DAAITGAAADDQFAVGIVYQF
CCEEEECCCCCCEEEEEEEEC
>Mature Secondary Structure
MKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDN
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEHHHHHHHHHHCCCCCC
NSENEDTSYARFGVKGETQITSELTGFGQFEYNLDASKPEGENQEKTRLTFAGLKYNELG
CCCCCCCCEEEECCCCCCEEHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEECCEECCCC
SFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRTNGVATYRNYDFFGLVDGLDF
CCCCCCCCCEEECHHHHHHHHEEECCCCCCCHHHCCCCCCCCEEEEECCCEEEEECCCEE
AIQYQGKNSNRSTKKQNGDGYALSVDYNINGFGIVGAYSKSDRTNDQVADGNGSNAELWS
EEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEE
LAAKYDANNVYAVVMYGETRNMTPGSIDTGVADREGNTIMRDQLINETQNFEAVVQYQFD
EEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCEEEEEEEEC
FGLRPSLGYVYSKGKDIKGVPGHRYVDADRVNYIEVGTWYYFNKNMNVYTAYKFNMLDKD
CCCCCCCCEEEECCCCCCCCCCCEEECCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCC
DAAITGAAADDQFAVGIVYQF
CCEEEECCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]