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The map label for this gene is ynjC [H]

Identifier: 91210972

GI number: 91210972

Start: 1870649

End: 1872208

Strand: Direct

Name: ynjC [H]

Synonym: UTI89_C1951

Alternate gene names: 91210972

Gene position: 1870649-1872208 (Clockwise)

Preceding gene: 91210971

Following gene: 91210973

Centisome position: 36.93

GC content: 56.28

Gene sequence:

>1560_bases
TTGGGTAAATGCGCTGGAACAAGAATGGCTACACCGTTACAGTACGCATTAATCTTTTTGCTGTGGGCGATGATGGCGGT
GATTTATGCACCGCTGATCCCGGCAGCTCTGACGCTGATATCGCCTGCTTTGTCGTTGACGCACTGGCAGGCGTTATTTG
CCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATTGCGGCGGTCGGGGCGTTGTTGATTGCC
CTGCTGGTGATTGTGGCGCTGTGGCCAGGGCCGAAATGGCAGCGTATGTGCGCCCGTCTGCCGTGGCTGCTCGCCATTCC
CCATGTGGCTTTTGCCACCAGCGCCCTTCTGATCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTC
CGCCAATGGACAAATTGGGTATTGGGCTGGGCCTCACCCTGGCGGTAAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCG
GCAGTATTGAGCGAAAAACGGCTGTTGCAGCAACTCATTGTGCTGGATTCGCTGGGCTACAGCCGCTGGCAATGCCTGAA
CTGGCTGCTGTTGCCCTCCGTCGCGTCTGCGTTAGCAATGGCGATGCTGGCGATTGTCGCCTGGTCGCTGTCGGTCGTGG
ATGTGGCGATTATTCTTGGGCCAGGTAATCCCCCGACGCTGGCGGTAATTAGCTGGCAGTGGTTAACTCAGGGCGACGCC
GATCAACAAACGAAAGGTGCACTCGCCAGCCTGCTGCTGATGCTGTTACTCGCCGCCTACGTTTTGCTGGGCTATCTGCT
ATGGCGTGGCTGGCGACGTACTATTCCCCGCGTAGATGGCGTTCGTAAGCCTGCCACGCCTTTATTGCCAGGCAATACGC
TGGCGAGTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTCGACGATCAATAGT
GAAGCGCTCATCAACAGCCTGACAATGGGGCTGGTGGCGGCATTCATCTCTTTGCTCCTGTTACTGCTGTGGCTGGAATG
GGGGCCACAGCGTCGCCAGTTGTGGCTATGGTTGCCCATTTTATTACCCGCTCTGCCGCTGGTGGCGGGCCAGTACACGC
TGGCGCTATGGCTGAACCTGGATGGAAGCTGGACGGCGGTGGTCTGGGGGCATCTGCTGTGGGTAATGCCGTGGATGCTG
TTTATCCTGCAACCCGCCTGGCAGCGCATTGATTCACGGTTAATTTTGATTGCGCAAACACTGGGCTGGTCGCGGGCCAA
AATCTTCTTTTACGTAAAATGTCCACTTATGTTGCGCCCTGCGCTGATTGCCTTCGCGGTGGGATTTTCAGTCAGTATTG
CGCAGTATATGCCGACGCTGTGGCTGGGCGCGGGGCGTTTTCCGACGCTCACCACTGAAGCGGTGGCATTAAGCAGCGGC
GGCAGCAACGGTATTCTCGCCGCCCAGGCTTTATGGCAACTGCTGTTACCGCTTATTATTTTTGCCCTGACCGCGTTAGT
CGCAAAATGGGTAGGTTATGTCAGACAAGGACTCCGCTAA

Upstream 100 bases:

>100_bases
CTGTTCTCGATCCGCAAAAACTGCCTGACGGGCAGCGCGAATCATTGCAATCGAGAATGCCGCAGGATCTGCCGCCTGTA
CTGGCTGAACCGCACGCAGG

Downstream 100 bases:

>100_bases
TGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTACAGTAGATAAAGGT
GACATTGTCACGTTAATGGG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 518

Protein sequence:

>519_residues
MGKCAGTRMATPLQYALIFLLWAMMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIA
LLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLIFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILA
AVLSEKRLLQQLIVLDSLGYSRWQCLNWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDA
DQQTKGALASLLLMLLLAAYVLLGYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINS
EALINSLTMGLVAAFISLLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWML
FILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSG
GSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR

Sequences:

>Translated_519_residues
MGKCAGTRMATPLQYALIFLLWAMMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIA
LLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLIFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILA
AVLSEKRLLQQLIVLDSLGYSRWQCLNWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDA
DQQTKGALASLLLMLLLAAYVLLGYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINS
EALINSLTMGLVAAFISLLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWML
FILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSG
GSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR
>Mature_518_residues
GKCAGTRMATPLQYALIFLLWAMMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIAL
LVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLIFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAA
VLSEKRLLQQLIVLDSLGYSRWQCLNWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDAD
QQTKGALASLLLMLLLAAYVLLGYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSE
ALINSLTMGLVAAFISLLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWMLF
ILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGG
SNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=511, Percent_Identity=96.4774951076321, Blast_Score=845, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 56826; Mature: 56695

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKCAGTRMATPLQYALIFLLWAMMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLIFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEEEE
DGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGY
CCCCHHHCCCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SRWQCLNWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEEEECCCCCC
DQQTKGALASLLLMLLLAAYVLLGYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
TGVLCVVLLAILADQSTINSEALINSLTMGLVAAFISLLLLLLWLEWGPQRRQLWLWLPI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEHHHH
LLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQT
HHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHH
LGWSRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSG
CCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECC
GSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GKCAGTRMATPLQYALIFLLWAMMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLIFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEEEE
DGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGY
CCCCHHHCCCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SRWQCLNWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEEEECCCCCC
DQQTKGALASLLLMLLLAAYVLLGYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
TGVLCVVLLAILADQSTINSEALINSLTMGLVAAFISLLLLLLWLEWGPQRRQLWLWLPI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEHHHH
LLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQT
HHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHH
LGWSRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSG
CCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECC
GSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]