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The map label for this gene is nqrD [H]

Identifier: 89898451

GI number: 89898451

Start: 747896

End: 748537

Strand: Direct

Name: nqrD [H]

Synonym: CF0644

Alternate gene names: 89898451

Gene position: 747896-748537 (Clockwise)

Preceding gene: 89898450

Following gene: 89898452

Centisome position: 64.13

GC content: 38.32

Gene sequence:

>642_bases
ATGGCAGACAATAAACCCTATAAAAGTTATTTCCTTGATCCTCTTTGGAACAACAACCAACCCTTAATCGCTATTTTAGG
GATTTGTTCTGCCCTGGCTGTAACAACAACGGTAAAAACAGCGATTACCATGGGTCTAGCCGTAAGTTTTGTTACGGGAT
GCTCTTCATTCTTCGTATCCTTACTGCGAAAAATTACCCCCGATAGCGTACGTATGATTACGCAGCTAATTATCATTAGC
TTATTTGTAATTGTAATTGATCAGTTCTTAAAAGCTTTTTTCTTTAACATTTCAAAAACACTTTCTGTGTTCGTTGGATT
AATCATTACCAACTGTATCGTAATGGGAAGAGCAGAAAGTCTAGCTAGAAACGTCCCTCCCATTCCAGCATTTTTAGATG
GCTTAGCCTCGGGATTAGGCTACGGTTGGGTTTTAGTTTTTGTCAGTATAATACGAGAATTCTTCGGTTTTGGAACTCTT
CTTGGATTACAACTCATCCCAAAATGTTTCTATGCTTCCGAAGCTCATCCTGATGGCTATGAAAACTTCGGCTTGATGGT
TTTAGCTCCTTCAGCATTCTTCCTTTTAGGCATTATGATTTGGGTAGTAAATATTCTTAGATCTAAGAAGGCAAAAAGGT
AG

Upstream 100 bases:

>100_bases
TTAACATGTAACGGCGTTACTGAAGCCTACGCTCTATCTCTGGCTCCTTATCGTAATTTGTTAATATCTTTCGCTCAGCT
TAATAATCAGAGAGATCGTA

Downstream 100 bases:

>100_bases
CTCTATGTGGTTAGGCGAATATACATGGCTAAATGTCTTTGGTATCTTTTTACAAGCAACCTTTATCCAAAATATCCTTT
TATCTAATTTCCTTGGAATG

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MADNKPYKSYFLDPLWNNNQPLIAILGICSALAVTTTVKTAITMGLAVSFVTGCSSFFVSLLRKITPDSVRMITQLIIIS
LFVIVIDQFLKAFFFNISKTLSVFVGLIITNCIVMGRAESLARNVPPIPAFLDGLASGLGYGWVLVFVSIIREFFGFGTL
LGLQLIPKCFYASEAHPDGYENFGLMVLAPSAFFLLGIMIWVVNILRSKKAKR

Sequences:

>Translated_213_residues
MADNKPYKSYFLDPLWNNNQPLIAILGICSALAVTTTVKTAITMGLAVSFVTGCSSFFVSLLRKITPDSVRMITQLIIIS
LFVIVIDQFLKAFFFNISKTLSVFVGLIITNCIVMGRAESLARNVPPIPAFLDGLASGLGYGWVLVFVSIIREFFGFGTL
LGLQLIPKCFYASEAHPDGYENFGLMVLAPSAFFLLGIMIWVVNILRSKKAKR
>Mature_212_residues
ADNKPYKSYFLDPLWNNNQPLIAILGICSALAVTTTVKTAITMGLAVSFVTGCSSFFVSLLRKITPDSVRMITQLIIISL
FVIVIDQFLKAFFFNISKTLSVFVGLIITNCIVMGRAESLARNVPPIPAFLDGLASGLGYGWVLVFVSIIREFFGFGTLL
GLQLIPKCFYASEAHPDGYENFGLMVLAPSAFFLLGIMIWVVNILRSKKAKR

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=198, Percent_Identity=34.8484848484849, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 23446; Mature: 23315

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADNKPYKSYFLDPLWNNNQPLIAILGICSALAVTTTVKTAITMGLAVSFVTGCSSFFVS
CCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRKITPDSVRMITQLIIISLFVIVIDQFLKAFFFNISKTLSVFVGLIITNCIVMGRAES
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LARNVPPIPAFLDGLASGLGYGWVLVFVSIIREFFGFGTLLGLQLIPKCFYASEAHPDGY
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ENFGLMVLAPSAFFLLGIMIWVVNILRSKKAKR
CCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADNKPYKSYFLDPLWNNNQPLIAILGICSALAVTTTVKTAITMGLAVSFVTGCSSFFVS
CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRKITPDSVRMITQLIIISLFVIVIDQFLKAFFFNISKTLSVFVGLIITNCIVMGRAES
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LARNVPPIPAFLDGLASGLGYGWVLVFVSIIREFFGFGTLLGLQLIPKCFYASEAHPDGY
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ENFGLMVLAPSAFFLLGIMIWVVNILRSKKAKR
CCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA