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The map label for this gene is dnaQ1 [H]

Identifier: 89898431

GI number: 89898431

Start: 728621

End: 729307

Strand: Direct

Name: dnaQ1 [H]

Synonym: CF0624

Alternate gene names: 89898431

Gene position: 728621-729307 (Clockwise)

Preceding gene: 89898430

Following gene: 89898432

Centisome position: 62.48

GC content: 39.45

Gene sequence:

>687_bases
ATGACAGCACTTATTTTTTATGATACGGAAACTACAGGAACACAGATAGATAAAGATCGTATTATAGAAATTGCTGCCTT
TAACAATGTAACTAAAGAATCCTTTGTAACTTATGTGAATCCAAAAATTCCTATTCCAGAGGAAGCATCAAAAATTCATG
GAATTACTACATCTACAGTAGCTTCAGCTCCTGATTTTCCAGAAGCCTATAAGCAATTCCGTGATTTTTGTGGAAATGAA
GCTGTCCTTGTTGCACACAACAACGACGGTTTTGACTTCCCTTTACTTGAAAAGGAATGTCGTCGGCATTCCTTGGAACC
TTTAACCTTACGAACCATAGATTCTTTAAAGTGGGCGCAAAAGTATCGCCCCGATCTGCCTAAACATAACTTACAATATC
TGCGTCAGGTGTATGGCTTTGCTGAAAATCAAGCCCACCGAGCTTTGGACGATGTGATTACTCTCCACGATGTATTTTCT
GCGCTGATTGGAGACCTTTCCGCAGAGCAAGTGCTCGCTTTAATGGAAGAGAGCTGTCACCCTAAAACATTTAAAATGCC
TTTTGGCAAATACAAAGGCAAACCCCTTACCGAAGTTCCCGCATCTTATATCCAATGGTTGGAAAATCAAGGAAATCTGG
ATAAAGATATGAAAGCAGCTATCGACTTAATGAAACAAATGACATGA

Upstream 100 bases:

>100_bases
AGTTTTTCCCATGCTATAGGTTTGATATCTTCAGGAAATATGAATCTTGATGAGTTGAAAAAACAAGCGCGTAAAGAAAA
TAAAAATTAGGAAAAGTTCG

Downstream 100 bases:

>100_bases
TACTTTCCGCGGCTTTTTCCCCCTGTCCTAATGATATTTTCTTATTTCGTTCTTTTTTAGAACGTCATGATGGTTTTTCA
TTATTAAATCAAATTACGAT

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTALIFYDTETTGTQIDKDRIIEIAAFNNVTKESFVTYVNPKIPIPEEASKIHGITTSTVASAPDFPEAYKQFRDFCGNE
AVLVAHNNDGFDFPLLEKECRRHSLEPLTLRTIDSLKWAQKYRPDLPKHNLQYLRQVYGFAENQAHRALDDVITLHDVFS
ALIGDLSAEQVLALMEESCHPKTFKMPFGKYKGKPLTEVPASYIQWLENQGNLDKDMKAAIDLMKQMT

Sequences:

>Translated_228_residues
MTALIFYDTETTGTQIDKDRIIEIAAFNNVTKESFVTYVNPKIPIPEEASKIHGITTSTVASAPDFPEAYKQFRDFCGNE
AVLVAHNNDGFDFPLLEKECRRHSLEPLTLRTIDSLKWAQKYRPDLPKHNLQYLRQVYGFAENQAHRALDDVITLHDVFS
ALIGDLSAEQVLALMEESCHPKTFKMPFGKYKGKPLTEVPASYIQWLENQGNLDKDMKAAIDLMKQMT
>Mature_227_residues
TALIFYDTETTGTQIDKDRIIEIAAFNNVTKESFVTYVNPKIPIPEEASKIHGITTSTVASAPDFPEAYKQFRDFCGNEA
VLVAHNNDGFDFPLLEKECRRHSLEPLTLRTIDSLKWAQKYRPDLPKHNLQYLRQVYGFAENQAHRALDDVITLHDVFSA
LIGDLSAEQVLALMEESCHPKTFKMPFGKYKGKPLTEVPASYIQWLENQGNLDKDMKAAIDLMKQMT

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 25943; Mature: 25812

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALIFYDTETTGTQIDKDRIIEIAAFNNVTKESFVTYVNPKIPIPEEASKIHGITTSTV
CEEEEEEECCCCCCCCCHHHEEEEEHHCCCCHHHHEEECCCCCCCCCHHHHHCCCCHHHH
ASAPDFPEAYKQFRDFCGNEAVLVAHNNDGFDFPLLEKECRRHSLEPLTLRTIDSLKWAQ
CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
KYRPDLPKHNLQYLRQVYGFAENQAHRALDDVITLHDVFSALIGDLSAEQVLALMEESCH
HHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
PKTFKMPFGKYKGKPLTEVPASYIQWLENQGNLDKDMKAAIDLMKQMT
CCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TALIFYDTETTGTQIDKDRIIEIAAFNNVTKESFVTYVNPKIPIPEEASKIHGITTSTV
EEEEEEECCCCCCCCCHHHEEEEEHHCCCCHHHHEEECCCCCCCCCHHHHHCCCCHHHH
ASAPDFPEAYKQFRDFCGNEAVLVAHNNDGFDFPLLEKECRRHSLEPLTLRTIDSLKWAQ
CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
KYRPDLPKHNLQYLRQVYGFAENQAHRALDDVITLHDVFSALIGDLSAEQVLALMEESCH
HHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
PKTFKMPFGKYKGKPLTEVPASYIQWLENQGNLDKDMKAAIDLMKQMT
CCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]