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The map label for this gene is omp06 [H]

Identifier: 89898332

GI number: 89898332

Start: 615647

End: 618025

Strand: Direct

Name: omp06 [H]

Synonym: CF0525

Alternate gene names: 89898332

Gene position: 615647-618025 (Clockwise)

Preceding gene: 89898331

Following gene: 89898333

Centisome position: 52.79

GC content: 38.17

Gene sequence:

>2379_bases
ATGTTCATAATGCGAAATAAAGTTATTCTGCGATTTACTGTTTTGGCTCTAATCCAAGCCCCAATAGCTCTAACAGCTAA
GGCTACAGAAACAGTTAAAGAAGGATACACAATAGTTGAATCTATTACGATTACAACAGAGGGTGAAAATTCTATAAACA
AACATCCACTACCGAAATTAAAAACGAAAAGTGGAGCTTTGTTTTCTCAAGCAGATTTTGATGAAGACTTACGCAATCTA
TCCAAGGATTACGATAGAGTAGAACCAAAAGTTGATTTTTCCAATGGAAAGACCACTATTTCCCTACTTCTTGTGGCCAA
GCCCTGCATTCGAAAGATTTGCATTACGGGAAATGAAGCCGTTCCTAATCACAAAATTCTTAAAACTCTGCAAATCTACG
AAAATAGCGTATTCGACAGAGAAAAGTTCTTGAAAAACTTCGATGAACTTAGAGTTTACTATCTTAAACGTGGCTATTTT
GAATCTAATCTCTGTTATGACCTAGATCATAATGAACATCAGGGCTATATCGACATAACTGTTCGGGTTCAGGAAGGTTC
TTGCGGAAGGATTAAAACATTTAAAATTAATGGCCTCAGCAAAAGTGAAAAGGCTGACGTCCAAGAAATCATTCTCACCA
AGCAGCATTCCAAAACTACAAGTTGGTTTACAGGAAGCGGCTTATATCATCCTGATATTGTTGAACAGGATGCTCTAGCC
ATCACCAACTATCTACATAACTTAGGTTATGCAGATGCAACAGTTACCCCACGACGAGAAGTCGATGAGTGTGGAAATAT
TGTACTCTACATGGATGTAGAAAAAGGTCCTCTTTATACCTTAGGCCACGTACATATTGAAGGATTTGATGTTTTGCCTA
GACGACTTGTAGAAAAACAATTGTCGGCAGGTCCTAATGACATATATTGCCCTGAAAACATCTGGGACGGTGCTCAGAAA
ATTAAAAATACATATGCTAAATATGGCTATATCAACACCAACGTTGACATAACATTCTCCCCTCATGCATCACGTTCTGT
CTATGATATAACTTACCAAGTAAGCGAGGGGTCCCCTTATAAAGTTGGTTTAATCAAAATCACGGGAAACACTCATACAA
AGCATGATGTTATCTTACATGAGAGCAGTCTCTTCCCAGGGGATACTTTTAACAAGTTAAAACTGGAGGATACAGAACAA
CGTTTAAGAAATACTGGTTATTTTCAAAGCGTTAGTGTTTACACAGCACGTTCTCAATTAGATCCTTTGGATAATGCTGA
AGAATACCGTGATATCTTTGTAGAAGTTAAGGAAACCACAACAGGAAACTTGGGATTGTTTTTAGGATTTAGTTCCTTAG
ACAATTTATTCGGGGGAATAGAACTTTCTGAAAGCAATTTCGATCTTCTAGGTTTCAGACACTTGTTTTCTAAGGGATTT
AAATGCTTAAGAGGCGGTGGAGAATATCTATTCTTAAAAGCCAACTTTGGGGATAAGGTCACTGACTATACCCTAAAATG
GACCAAACCTCACTTTTTAAATACTCCATGGATTTTAGGTGTGGAACTTGATAAATCTATCAATAGAGCACTTTCTAAAG
ATTATTCCGTTGAGACTTATGGTGGAAATGTCAGCACTACATATATCTTAAATCAACAACTGAAATACGGAATCTATTAC
CGTGGCACTCAAACCAGTTTACATAAAAAGAAAAAGGATCAAGAGGGACCAGATATCGCAGCCAATAAAGGTTTCGTATC
AGCTGCTGGAGTAAACTTAAATTTCGACTCCATAAATAACCCAAGAAATCCCACTACAGGAGTACGTAGTGGAATAAACT
TCGAAGTTTCTGGTCTTGGCGGCACATATCATTTTACAAAACTTTCAGTAAACAGCTCGATATATCGAAAACTAACAAGA
AAAGGCGTTTTAAAAATCAAAGGAGAAGCTCAATTCCTTAAACCATTTGGTAATACAACTATAGAGGGTATTCCCATTAG
CGAGCGCTTCTTCTTGGGTGGAGAAACTACTGTTCGTGGATATAAGCCATTTATTATTGGTCCCAAATTCTCTCCTACGG
AACCTCAGGGCGGTCTATCCTCTCTTCTACTTACTGAAGAGTTTCAGTACCCTTTAATCAATCAGCCTAGTGTCAGTGCT
TTTGTCTTCCTAGATGCGGGATTCATTGGACTTAAAGAATACACTATCCGCTTAAAAGATCTTTGCAGTAGCGCAGGATT
CGGCTTACGTTTTGATGTAATGAACAACGTCCCCGTTATGTTAGGATTTGGCTGGCCATTCCGTCCCACAGAAATGTTTG
ACGGTGAAAAGATCGATGTTTCTCAACGATTCTTCTTTGCCTTAGGAGGTGTCTTCTAG

Upstream 100 bases:

>100_bases
ATGTTCAAGATAGTAAGATCTTGTTAAAAAACATCCTACTCCTTATTTTTGTGCTTACTTCAAAAAACTAATTTTTCTGT
CCTAGGGGAAATTCTTTCGA

Downstream 100 bases:

>100_bases
GTATAACTGGGAAAGAAAGTAAGCGAAGCTCTAAATCTTTGGTTGTCTTCAGAGAGGGCTTTTGCTAATCTAAAGTTCTT
CATCTCTTAGATCTTATAAA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 792; Mature: 792

Protein sequence:

>792_residues
MFIMRNKVILRFTVLALIQAPIALTAKATETVKEGYTIVESITITTEGENSINKHPLPKLKTKSGALFSQADFDEDLRNL
SKDYDRVEPKVDFSNGKTTISLLLVAKPCIRKICITGNEAVPNHKILKTLQIYENSVFDREKFLKNFDELRVYYLKRGYF
ESNLCYDLDHNEHQGYIDITVRVQEGSCGRIKTFKINGLSKSEKADVQEIILTKQHSKTTSWFTGSGLYHPDIVEQDALA
ITNYLHNLGYADATVTPRREVDECGNIVLYMDVEKGPLYTLGHVHIEGFDVLPRRLVEKQLSAGPNDIYCPENIWDGAQK
IKNTYAKYGYINTNVDITFSPHASRSVYDITYQVSEGSPYKVGLIKITGNTHTKHDVILHESSLFPGDTFNKLKLEDTEQ
RLRNTGYFQSVSVYTARSQLDPLDNAEEYRDIFVEVKETTTGNLGLFLGFSSLDNLFGGIELSESNFDLLGFRHLFSKGF
KCLRGGGEYLFLKANFGDKVTDYTLKWTKPHFLNTPWILGVELDKSINRALSKDYSVETYGGNVSTTYILNQQLKYGIYY
RGTQTSLHKKKKDQEGPDIAANKGFVSAAGVNLNFDSINNPRNPTTGVRSGINFEVSGLGGTYHFTKLSVNSSIYRKLTR
KGVLKIKGEAQFLKPFGNTTIEGIPISERFFLGGETTVRGYKPFIIGPKFSPTEPQGGLSSLLLTEEFQYPLINQPSVSA
FVFLDAGFIGLKEYTIRLKDLCSSAGFGLRFDVMNNVPVMLGFGWPFRPTEMFDGEKIDVSQRFFFALGGVF

Sequences:

>Translated_792_residues
MFIMRNKVILRFTVLALIQAPIALTAKATETVKEGYTIVESITITTEGENSINKHPLPKLKTKSGALFSQADFDEDLRNL
SKDYDRVEPKVDFSNGKTTISLLLVAKPCIRKICITGNEAVPNHKILKTLQIYENSVFDREKFLKNFDELRVYYLKRGYF
ESNLCYDLDHNEHQGYIDITVRVQEGSCGRIKTFKINGLSKSEKADVQEIILTKQHSKTTSWFTGSGLYHPDIVEQDALA
ITNYLHNLGYADATVTPRREVDECGNIVLYMDVEKGPLYTLGHVHIEGFDVLPRRLVEKQLSAGPNDIYCPENIWDGAQK
IKNTYAKYGYINTNVDITFSPHASRSVYDITYQVSEGSPYKVGLIKITGNTHTKHDVILHESSLFPGDTFNKLKLEDTEQ
RLRNTGYFQSVSVYTARSQLDPLDNAEEYRDIFVEVKETTTGNLGLFLGFSSLDNLFGGIELSESNFDLLGFRHLFSKGF
KCLRGGGEYLFLKANFGDKVTDYTLKWTKPHFLNTPWILGVELDKSINRALSKDYSVETYGGNVSTTYILNQQLKYGIYY
RGTQTSLHKKKKDQEGPDIAANKGFVSAAGVNLNFDSINNPRNPTTGVRSGINFEVSGLGGTYHFTKLSVNSSIYRKLTR
KGVLKIKGEAQFLKPFGNTTIEGIPISERFFLGGETTVRGYKPFIIGPKFSPTEPQGGLSSLLLTEEFQYPLINQPSVSA
FVFLDAGFIGLKEYTIRLKDLCSSAGFGLRFDVMNNVPVMLGFGWPFRPTEMFDGEKIDVSQRFFFALGGVF
>Mature_792_residues
MFIMRNKVILRFTVLALIQAPIALTAKATETVKEGYTIVESITITTEGENSINKHPLPKLKTKSGALFSQADFDEDLRNL
SKDYDRVEPKVDFSNGKTTISLLLVAKPCIRKICITGNEAVPNHKILKTLQIYENSVFDREKFLKNFDELRVYYLKRGYF
ESNLCYDLDHNEHQGYIDITVRVQEGSCGRIKTFKINGLSKSEKADVQEIILTKQHSKTTSWFTGSGLYHPDIVEQDALA
ITNYLHNLGYADATVTPRREVDECGNIVLYMDVEKGPLYTLGHVHIEGFDVLPRRLVEKQLSAGPNDIYCPENIWDGAQK
IKNTYAKYGYINTNVDITFSPHASRSVYDITYQVSEGSPYKVGLIKITGNTHTKHDVILHESSLFPGDTFNKLKLEDTEQ
RLRNTGYFQSVSVYTARSQLDPLDNAEEYRDIFVEVKETTTGNLGLFLGFSSLDNLFGGIELSESNFDLLGFRHLFSKGF
KCLRGGGEYLFLKANFGDKVTDYTLKWTKPHFLNTPWILGVELDKSINRALSKDYSVETYGGNVSTTYILNQQLKYGIYY
RGTQTSLHKKKKDQEGPDIAANKGFVSAAGVNLNFDSINNPRNPTTGVRSGINFEVSGLGGTYHFTKLSVNSSIYRKLTR
KGVLKIKGEAQFLKPFGNTTIEGIPISERFFLGGETTVRGYKPFIIGPKFSPTEPQGGLSSLLLTEEFQYPLINQPSVSA
FVFLDAGFIGLKEYTIRLKDLCSSAGFGLRFDVMNNVPVMLGFGWPFRPTEMFDGEKIDVSQRFFFALGGVF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=669, Percent_Identity=21.6741405082212, Blast_Score=86, Evalue=7e-18,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 89108; Mature: 89108

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIMRNKVILRFTVLALIQAPIALTAKATETVKEGYTIVESITITTEGENSINKHPLPKL
CEEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC
KTKSGALFSQADFDEDLRNLSKDYDRVEPKVDFSNGKTTISLLLVAKPCIRKICITGNEA
CCCCCCEEECCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEHHHHHHHEEECCCCC
VPNHKILKTLQIYENSVFDREKFLKNFDELRVYYLKRGYFESNLCYDLDHNEHQGYIDIT
CCCHHHHHHHHHHHCCCCCHHHHHHCHHHHEEEEEECCCCCCCCEEECCCCCCCCEEEEE
VRVQEGSCGRIKTFKINGLSKSEKADVQEIILTKQHSKTTSWFTGSGLYHPDIVEQDALA
EEEECCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHH
ITNYLHNLGYADATVTPRREVDECGNIVLYMDVEKGPLYTLGHVHIEGFDVLPRRLVEKQ
HHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHH
LSAGPNDIYCPENIWDGAQKIKNTYAKYGYINTNVDITFSPHASRSVYDITYQVSEGSPY
HHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEEEEECCCCCCEEEEEEEEECCCCCE
KVGLIKITGNTHTKHDVILHESSLFPGDTFNKLKLEDTEQRLRNTGYFQSVSVYTARSQL
EEEEEEEECCCCCCEEEEEEECCCCCCCCCCCEEECCHHHHHHHCCCEEEEEEEEEHHHC
DPLDNAEEYRDIFVEVKETTTGNLGLFLGFSSLDNLFGGIELSESNFDLLGFRHLFSKGF
CCCCCHHHHHEEEEEEECCCCCCEEEEEEHHHHHHHHCCEEECCCCCCHHHHHHHHHHCH
KCLRGGGEYLFLKANFGDKVTDYTLKWTKPHFLNTPWILGVELDKSINRALSKDYSVETY
HHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEEEEEECCHHHHHHHCCCCCEEEE
GGNVSTTYILNQQLKYGIYYRGTQTSLHKKKKDQEGPDIAANKGFVSAAGVNLNFDSINN
CCCEEEEEEEECCEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCEEEEECEEEECCCCCC
PRNPTTGVRSGINFEVSGLGGTYHFTKLSVNSSIYRKLTRKGVLKIKGEAQFLKPFGNTT
CCCCCHHHHCCCCEEEECCCCEEEEEEEECCHHHHHHHHHCCCEEEECCCEEECCCCCCE
IEGIPISERFFLGGETTVRGYKPFIIGPKFSPTEPQGGLSSLLLTEEFQYPLINQPSVSA
EECCCCCCEEEECCCCEECCCCCEEECCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEE
FVFLDAGFIGLKEYTIRLKDLCSSAGFGLRFDVMNNVPVMLGFGWPFRPTEMFDGEKIDV
EEEEECCEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCEECH
SQRFFFALGGVF
HHHHHHHHCCCC
>Mature Secondary Structure
MFIMRNKVILRFTVLALIQAPIALTAKATETVKEGYTIVESITITTEGENSINKHPLPKL
CEEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC
KTKSGALFSQADFDEDLRNLSKDYDRVEPKVDFSNGKTTISLLLVAKPCIRKICITGNEA
CCCCCCEEECCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEHHHHHHHEEECCCCC
VPNHKILKTLQIYENSVFDREKFLKNFDELRVYYLKRGYFESNLCYDLDHNEHQGYIDIT
CCCHHHHHHHHHHHCCCCCHHHHHHCHHHHEEEEEECCCCCCCCEEECCCCCCCCEEEEE
VRVQEGSCGRIKTFKINGLSKSEKADVQEIILTKQHSKTTSWFTGSGLYHPDIVEQDALA
EEEECCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHH
ITNYLHNLGYADATVTPRREVDECGNIVLYMDVEKGPLYTLGHVHIEGFDVLPRRLVEKQ
HHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHH
LSAGPNDIYCPENIWDGAQKIKNTYAKYGYINTNVDITFSPHASRSVYDITYQVSEGSPY
HHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEEEEECCCCCCEEEEEEEEECCCCCE
KVGLIKITGNTHTKHDVILHESSLFPGDTFNKLKLEDTEQRLRNTGYFQSVSVYTARSQL
EEEEEEEECCCCCCEEEEEEECCCCCCCCCCCEEECCHHHHHHHCCCEEEEEEEEEHHHC
DPLDNAEEYRDIFVEVKETTTGNLGLFLGFSSLDNLFGGIELSESNFDLLGFRHLFSKGF
CCCCCHHHHHEEEEEEECCCCCCEEEEEEHHHHHHHHCCEEECCCCCCHHHHHHHHHHCH
KCLRGGGEYLFLKANFGDKVTDYTLKWTKPHFLNTPWILGVELDKSINRALSKDYSVETY
HHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEEEEEECCHHHHHHHCCCCCEEEE
GGNVSTTYILNQQLKYGIYYRGTQTSLHKKKKDQEGPDIAANKGFVSAAGVNLNFDSINN
CCCEEEEEEEECCEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCEEEEECEEEECCCCCC
PRNPTTGVRSGINFEVSGLGGTYHFTKLSVNSSIYRKLTRKGVLKIKGEAQFLKPFGNTT
CCCCCHHHHCCCCEEEECCCCEEEEEEEECCHHHHHHHHHCCCEEEECCCEEECCCCCCE
IEGIPISERFFLGGETTVRGYKPFIIGPKFSPTEPQGGLSSLLLTEEFQYPLINQPSVSA
EECCCCCCEEEECCCCEECCCCCEEECCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEE
FVFLDAGFIGLKEYTIRLKDLCSSAGFGLRFDVMNNVPVMLGFGWPFRPTEMFDGEKIDV
EEEEECCEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCEECH
SQRFFFALGGVF
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]