Click here to switch to the map view.

The map label for this gene is yfhC [H]

Identifier: 89898061

GI number: 89898061

Start: 302578

End: 303051

Strand: Direct

Name: yfhC [H]

Synonym: CF0254

Alternate gene names: 89898061

Gene position: 302578-303051 (Clockwise)

Preceding gene: 89898058

Following gene: 89898062

Centisome position: 25.94

GC content: 38.82

Gene sequence:

>474_bases
ATGAATATAGAAAAAGATATATTTTTTATGAAACAAGCTTTGAGGGAAGCTCGCCAAGCTTATGATGAGGATGAGGTCCC
AGTGGGCTGTGTTATAGTTAAAGATAATAAAATAATTGCTCGTGGTCATAATACTATAGAAAAGCTGCAAGATCCAACAG
CTCATGCTGAAATTCTATGTATAGGAGCTGCGGCACAATATTTAGAAAACTGGCGTCTGGTTGATACTGTGCTCTATTGT
ACTCTCGAACCCTGTTTGATGTGTGCTGGAGCTATTCAACAGGCTCGCGTCCGTAGAATTGTCTGGGCAGCTCCAGATTT
GCGTTTAGGTGCAGGAGGGAGTTGGATAAATGTTTTTACAGAAAAACACCCTTTTCATCGGGTAGAATGTTTCTCTGGGA
TATGTCGTGAAGAATCTGAACAATTGATGAAACAATTTTTTATAGAGAAGAGAAAAGAGAAAAGAGAAAAATGA

Upstream 100 bases:

>100_bases
TCGTTAAACTAATATGAGATGTTTTTACTATTTCTTAATAGGTGGATTTTTTTTATAATCCAATTCAAAAAGTAGTTGAG
AGTTATTTAACATAAATCTG

Downstream 100 bases:

>100_bases
AAAATAAAATACACGAATTGTTAAATCAGCTTTATGAAAATCAAAAATCTCGTTTACAGGCTGTGGGAGAACAGATTGTT
CCCAACTTAACATCTGATGA

Product: cytosine/adenosine deaminases

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MNIEKDIFFMKQALREARQAYDEDEVPVGCVIVKDNKIIARGHNTIEKLQDPTAHAEILCIGAAAQYLENWRLVDTVLYC
TLEPCLMCAGAIQQARVRRIVWAAPDLRLGAGGSWINVFTEKHPFHRVECFSGICREESEQLMKQFFIEKRKEKREK

Sequences:

>Translated_157_residues
MNIEKDIFFMKQALREARQAYDEDEVPVGCVIVKDNKIIARGHNTIEKLQDPTAHAEILCIGAAAQYLENWRLVDTVLYC
TLEPCLMCAGAIQQARVRRIVWAAPDLRLGAGGSWINVFTEKHPFHRVECFSGICREESEQLMKQFFIEKRKEKREK
>Mature_157_residues
MNIEKDIFFMKQALREARQAYDEDEVPVGCVIVKDNKIIARGHNTIEKLQDPTAHAEILCIGAAAQYLENWRLVDTVLYC
TLEPCLMCAGAIQQARVRRIVWAAPDLRLGAGGSWINVFTEKHPFHRVECFSGICREESEQLMKQFFIEKRKEKREK

Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]

COG id: COG0590

COG function: function code FJ; Cytosine/adenosine deaminases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Homo sapiens, GI124107608, Length=147, Percent_Identity=29.9319727891156, Blast_Score=89, Evalue=2e-18,
Organism=Escherichia coli, GI145693172, Length=146, Percent_Identity=43.8356164383562, Blast_Score=135, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17541138, Length=171, Percent_Identity=35.0877192982456, Blast_Score=96, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17554608, Length=146, Percent_Identity=33.5616438356164, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322425, Length=156, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21355527, Length=145, Percent_Identity=36.551724137931, Blast_Score=93, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]

EC number: NA

Molecular weight: Translated: 18125; Mature: 18125

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIEKDIFFMKQALREARQAYDEDEVPVGCVIVKDNKIIARGHNTIEKLQDPTAHAEILC
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCHHHHHHCCCCCCHHEEE
IGAAAQYLENWRLVDTVLYCTLEPCLMCAGAIQQARVRRIVWAAPDLRLGAGGSWINVFT
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEC
EKHPFHRVECFSGICREESEQLMKQFFIEKRKEKREK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIEKDIFFMKQALREARQAYDEDEVPVGCVIVKDNKIIARGHNTIEKLQDPTAHAEILC
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCHHHHHHCCCCCCHHEEE
IGAAAQYLENWRLVDTVLYCTLEPCLMCAGAIQQARVRRIVWAAPDLRLGAGGSWINVFT
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEC
EKHPFHRVECFSGICREESEQLMKQFFIEKRKEKREK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]