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The map label for this gene is rimN [H]

Identifier: 89257161

GI number: 89257161

Start: 1846420

End: 1846962

Strand: Direct

Name: rimN [H]

Synonym: FTL_1913

Alternate gene names: 89257161

Gene position: 1846420-1846962 (Clockwise)

Preceding gene: 89257160

Following gene: 89257162

Centisome position: 97.39

GC content: 29.65

Gene sequence:

>543_bases
ATGCTTACAAAAGATTTGAATAAAATCATCGGTAAAATAACAGAAGATAATGTTGTTAGTATTCCTACAGATACAGTATA
TGGGCTAAGTTGCAACATCTCTAAAGCTGCCGTAGCAAAAGTTATAAACTTAAAAAAAAGGGATTCAAGCAAAGGTTTTA
TTATAATCTCACATGATCACAAGCATTTACTCAAGTATGCAGATATAACTAAAATATCTAATGAGCAAATCAATAAAATA
TCCTCTAAACAAGCTCAACCAACTACTTGGATAGTACCAGGTAAGAAAGATATTCAATGGTTAACTGGTGGTAAAACAAC
TATTGCCATACGCTTAGTAACAACTGAAATAGTAACTTATATTTGTGAAAATATTAATGATGCTATTATTTCAACTAGTG
CTAATATATCCGGCGAAGATTTCATTAATAATGCTAAATCGATAAGTAAAACCTTTGATAATATTTATGTACTAGAAACA
GAAGTTAGGTTTTCACAACCATCTAGAATTATTGATATAATTAGCGGACAGCAGTATAGATAA

Upstream 100 bases:

>100_bases
CTAAACTTACTTAAACCTATAGGCTATTTGTAGTCTATAGGTTTTTTTATTTATAAAATGTAATAAAATATGCCTAATTT
AGTTACATGTTCGATAAAAT

Downstream 100 bases:

>100_bases
ATAACAATTGATATACGAAAAGCTTGATAAATAGCTTAAAATGTAATAGCATTATCAGTGTAAATTCTTTTGGATAAATG
GATTAGAAAGGAATAAAATG

Product: Sua5/YciO/YrdC family protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLTKDLNKIIGKITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDHKHLLKYADITKISNEQINKI
SSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTYICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLET
EVRFSQPSRIIDIISGQQYR

Sequences:

>Translated_180_residues
MLTKDLNKIIGKITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDHKHLLKYADITKISNEQINKI
SSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTYICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLET
EVRFSQPSRIIDIISGQQYR
>Mature_180_residues
MLTKDLNKIIGKITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDHKHLLKYADITKISNEQINKI
SSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTYICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLET
EVRFSQPSRIIDIISGQQYR

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=173, Percent_Identity=30.0578034682081, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20055; Mature: 20055

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKDLNKIIGKITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDH
CCCHHHHHHHCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCH
KHLLKYADITKISNEQINKISSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTY
HHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCEEEEEEEHHHHHHHH
ICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLETEVRFSQPSRIIDIISGQQYR
HHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MLTKDLNKIIGKITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDH
CCCHHHHHHHCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCH
KHLLKYADITKISNEQINKISSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTY
HHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCEEEEEEEHHHHHHHH
ICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLETEVRFSQPSRIIDIISGQQYR
HHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA