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The map label for this gene is atpD [H]

Identifier: 89257058

GI number: 89257058

Start: 1728658

End: 1730034

Strand: Reverse

Name: atpD [H]

Synonym: FTL_1795

Alternate gene names: 89257058

Gene position: 1730034-1728658 (Counterclockwise)

Preceding gene: 89257059

Following gene: 89257057

Centisome position: 91.25

GC content: 38.63

Gene sequence:

>1377_bases
ATGAGTACAGGTAAAATTATTCAAGTAATTGGTGCTGTTATTGATGTAGAGTTTGCTCGAGATAACACGCCTAAAGTATA
TGATGCTTTAAATGTAGTAGAAGCTGGTTTAGTATTAGAAGTTCAGCAACAAATTGGTGATGGCGTAGTTCGTACAATTG
CTATGGGATCTAGTGATGGTCTTAGACGTGGTATGGAAGTTAAGAACACAAATGCGCCTATTTCTGTTCCAGTTGGACAT
GGCACACTTGGACGTATCATGAATGTTTTAGGTGAACCAATTGATGAAGCTGGTCCAATTGAATATACTGAGAAAAGATC
TATCCATCAAGCTCCTCCTGCATATGATGAGTTAGCATTAAGTACAGAAATATTAGAAACAGGTATCAAAGTAGTTGACC
TTATTTGTCCATTTGCTAAGGGCGGTAAAGTTGGTTTATTTGGCGGTGCAGGTGTTGGTAAAACTGTAACGATGATGGAA
CTTATCAACAATATTGCAAAAGAACATAGTGGCTACTCTGTATTTTCCGGTGTTGGTGAAAGAACTCGTGAAGGTAATGA
CTTCTACTATGAGATGAAATATTCTAATGTATTGGATAAAGTATCATTAGTATATGGTCAGATGAATGAGCCGCCTGGAA
ACAGATTAAGAGTAGCTCTTAGTGGCTTAACAATAGCAGAAGGATTCCGTGATGAAAAGCGTGATGTTTTGATGTTTATC
GATAACATCTATCGTTATACATTAGCAGGTACAGAGGTATCGGCGCTACTTGGTCGTATGCCATCTGCTGTGGGTTATCA
GCCAACGCTTGCAGCTGAGATGGGTGCTTTACAGGAGCGTATTACATCTACTAAGACAGGATCTATTACTTCTGTCCAGG
CTGTATATGTACCGGCAGATGACTTAACAGATCCTTCACCAGCTACAACTTTCTCACACTTAGATGCAACGATTGTACTA
TCACGTCAAATTGCTGAGTTAGGTATTTATCCTGCGGTTGATCCTCTAGATTCAACTTCTAGACAGTTAGATCCTTTAGT
TGTAGGTCAGGACCACTATGAAACAGCTCGTGCAGTGCAGAAAGTACTTCAAAGATACAAAGAGTTAAAAGATATTATCG
CTATTCTTGGTATGGATGAGTTATCTGATGAAGATAAGAAAATTGTAGATAGAGCTCGTAAGATTCAGAGATTCTTATCA
CAGCCATTCCATGTTGCAGAGGTGTTTACTGGTAACCCTGGTAAGTTCGTATCACTTAAGGATACTGTAGCAAGCTTCAA
AGCTATAGTTAACGGTGAATATGATCATTTACCAGAGCAAGCTTTCTATATGGTTGGTTCTATACAAGAAGCAATTGAGA
AAGCAAAAACTCTATAA

Upstream 100 bases:

>100_bases
TGATCAGTTGAAATTAGATTACAACAAAGTAAGACAGGCTATGATTACGCAAGAACTTGCAGAAATTTGTTCAGGTGCGG
CAGCAGTTTAGGAGAAGTAA

Downstream 100 bases:

>100_bases
TAGGTTATTGATATGACAAAAAAATATCTAAAAGTTGATGTCGTTAGTCCTCTAGGTTCAGTTTTCAAGGGTGAAGCTGA
TATGGTGAGTCTGCGCGGCT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSTGKIIQVIGAVIDVEFARDNTPKVYDALNVVEAGLVLEVQQQIGDGVVRTIAMGSSDGLRRGMEVKNTNAPISVPVGH
GTLGRIMNVLGEPIDEAGPIEYTEKRSIHQAPPAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMME
LINNIAKEHSGYSVFSGVGERTREGNDFYYEMKYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFI
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTKTGSITSVQAVYVPADDLTDPSPATTFSHLDATIVL
SRQIAELGIYPAVDPLDSTSRQLDPLVVGQDHYETARAVQKVLQRYKELKDIIAILGMDELSDEDKKIVDRARKIQRFLS
QPFHVAEVFTGNPGKFVSLKDTVASFKAIVNGEYDHLPEQAFYMVGSIQEAIEKAKTL

Sequences:

>Translated_458_residues
MSTGKIIQVIGAVIDVEFARDNTPKVYDALNVVEAGLVLEVQQQIGDGVVRTIAMGSSDGLRRGMEVKNTNAPISVPVGH
GTLGRIMNVLGEPIDEAGPIEYTEKRSIHQAPPAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMME
LINNIAKEHSGYSVFSGVGERTREGNDFYYEMKYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFI
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTKTGSITSVQAVYVPADDLTDPSPATTFSHLDATIVL
SRQIAELGIYPAVDPLDSTSRQLDPLVVGQDHYETARAVQKVLQRYKELKDIIAILGMDELSDEDKKIVDRARKIQRFLS
QPFHVAEVFTGNPGKFVSLKDTVASFKAIVNGEYDHLPEQAFYMVGSIQEAIEKAKTL
>Mature_457_residues
STGKIIQVIGAVIDVEFARDNTPKVYDALNVVEAGLVLEVQQQIGDGVVRTIAMGSSDGLRRGMEVKNTNAPISVPVGHG
TLGRIMNVLGEPIDEAGPIEYTEKRSIHQAPPAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMEL
INNIAKEHSGYSVFSGVGERTREGNDFYYEMKYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFID
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTKTGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLS
RQIAELGIYPAVDPLDSTSRQLDPLVVGQDHYETARAVQKVLQRYKELKDIIAILGMDELSDEDKKIVDRARKIQRFLSQ
PFHVAEVFTGNPGKFVSLKDTVASFKAIVNGEYDHLPEQAFYMVGSIQEAIEKAKTL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=68.2403433476395, Blast_Score=637, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=321, Percent_Identity=27.4143302180685, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI19913428, Length=402, Percent_Identity=25.6218905472637, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI19913426, Length=397, Percent_Identity=25.1889168765743, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI50345984, Length=420, Percent_Identity=23.8095238095238, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI4757810, Length=420, Percent_Identity=23.8095238095238, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=80.8695652173913, Blast_Score=765, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=337, Percent_Identity=30.2670623145401, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1790172, Length=420, Percent_Identity=25.7142857142857, Blast_Score=120, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=67.381974248927, Blast_Score=627, Evalue=1e-180,
Organism=Caenorhabditis elegans, GI17565854, Length=353, Percent_Identity=27.1954674220963, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=389, Percent_Identity=24.1645244215938, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=367, Percent_Identity=24.5231607629428, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988063, Length=368, Percent_Identity=25, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17510931, Length=345, Percent_Identity=25.2173913043478, Blast_Score=102, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=397, Percent_Identity=23.9294710327456, Blast_Score=85, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=68.1222707423581, Blast_Score=632, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=389, Percent_Identity=25.4498714652956, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=25.5434782608696, Blast_Score=103, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=230, Percent_Identity=27.8260869565217, Blast_Score=84, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=67.5268817204301, Blast_Score=627, Evalue=1e-180,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=64.7311827956989, Blast_Score=587, Evalue=1e-168,
Organism=Drosophila melanogaster, GI20129479, Length=324, Percent_Identity=28.0864197530864, Blast_Score=112, Evalue=8e-25,
Organism=Drosophila melanogaster, GI281361666, Length=395, Percent_Identity=25.3164556962025, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24646341, Length=395, Percent_Identity=25.3164556962025, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI17136796, Length=395, Percent_Identity=25.3164556962025, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24583988, Length=354, Percent_Identity=25.4237288135593, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583986, Length=354, Percent_Identity=25.4237288135593, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583984, Length=354, Percent_Identity=25.4237288135593, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=26.2345679012346, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24658560, Length=399, Percent_Identity=24.0601503759398, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=53.2608695652174, Blast_Score=88, Evalue=2e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 49866; Mature: 49734

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGKIIQVIGAVIDVEFARDNTPKVYDALNVVEAGLVLEVQQQIGDGVVRTIAMGSSDG
CCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHH
LRRGMEVKNTNAPISVPVGHGTLGRIMNVLGEPIDEAGPIEYTEKRSIHQAPPAYDELAL
HHCCCEECCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCHHHHHH
STEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFSGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCH
RTREGNDFYYEMKYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFI
HCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHCCCCCHHHHHHHH
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTKTGSITSVQAVYVPAD
HHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSRQLDPLVVGQDHYETARAVQ
CCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEECCCHHHHHHHHH
KVLQRYKELKDIIAILGMDELSDEDKKIVDRARKIQRFLSQPFHVAEVFTGNPGKFVSLK
HHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHH
DTVASFKAIVNGEYDHLPEQAFYMVGSIQEAIEKAKTL
HHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STGKIIQVIGAVIDVEFARDNTPKVYDALNVVEAGLVLEVQQQIGDGVVRTIAMGSSDG
CCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHH
LRRGMEVKNTNAPISVPVGHGTLGRIMNVLGEPIDEAGPIEYTEKRSIHQAPPAYDELAL
HHCCCEECCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCHHHHHH
STEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFSGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCH
RTREGNDFYYEMKYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFI
HCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHCCCCCHHHHHHHH
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTKTGSITSVQAVYVPAD
HHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSRQLDPLVVGQDHYETARAVQ
CCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEECCCHHHHHHHHH
KVLQRYKELKDIIAILGMDELSDEDKKIVDRARKIQRFLSQPFHVAEVFTGNPGKFVSLK
HHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHH
DTVASFKAIVNGEYDHLPEQAFYMVGSIQEAIEKAKTL
HHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA