Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 89257033

GI number: 89257033

Start: 1699742

End: 1700704

Strand: Direct

Name: cydB [H]

Synonym: FTL_1765

Alternate gene names: 89257033

Gene position: 1699742-1700704 (Clockwise)

Preceding gene: 89257031

Following gene: 89257034

Centisome position: 89.65

GC content: 30.32

Gene sequence:

>963_bases
ATGGATTTAGGATTAATTTGGCTAGCAATTATTGCTTTTGCACTACTGCTATACATGATCTTGGATGGTTTTGCACTAGG
GATGGGAATATTATTTCCACTTTTAGATGATCACCAAAAGGATATAGCAACAAGTATTTTGTTACCAACATGGGATGGTA
ACCAAACATGGCTTGTTTTTGCACTAGCATGTTTCTATGGAATGTTTCCAATAGCTTTCGCGTATATATTTCCTAAAATA
TATTTGTCAGCAATATTATTAGTAGTAATGATATTGCTAAGAGGAATATGTTTTGAATTTCGATTAAAATCTTCCCAAAA
AGGTATAAAAAATTGGGATAAATTATTCTTTATATCATCTTTTGTAGCAACATTTCTACAGGGCTATATATTTGGCGAAT
TAATTGTTGGTTTCCCTCATAACAGTTTTTATAACTTTGGCTTTTCTGCTGTCACAGGTATTACATTAATATTCGGTTAT
AGTTTACTTGGAGCAACACGTTTGATTTTAAAGTCTGAGAGAGAGTTATTCACTAAAGCTAAACAGCTTGCTAAGATCTG
CTGTATTATTCTAGCTGTTCTGATGCTAGTAATTGGTGGAATGACTCCTCTGTATGTTAAACTGCCTTTAGATAACCTTT
ATAAAATGGCAATATTGATAGAATTATTCGTGCTTACTATAATCAGCTTTTTGGTTCTTATTAAGGTTATCGAAGCAAAG
AATCATGCTTTACCATACTGGCTGGCAGTTGCAATATTTATATTAACTTATATAAGTATGTTAACATTAATATTCCCATA
TATTATTCCTTATCAAATAACATATACACAAGCTCAAGCTAGTGATACAACATTAATATTTACTTTAATTCCAGCGATTA
TAATGATTCCATTATTATTACTTTATACTAGCTATGCCTATTATATTTTCAGAGGAAAAACTAAAGAAAAATTAAGTTAT
TAG

Upstream 100 bases:

>100_bases
TAGGATCATTAATGGTGGGCCAAGCACTGATGGAGAAGAAAGAATGCCTTACTCGTATTTTCAATCAGTCGAAAAGAATG
CAGGTGATGAGGAGTAGATT

Downstream 100 bases:

>100_bases
GAGTATAACTTTGAAGAATCAAAAGAGTATAGATGTTTATCTAGCATATTCTGGTTTAATACCTTTCTTATTCTTTACAA
TCTGCTTACTATTTAATTAT

Product: cytochrome oxidase bd-II, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MDLGLIWLAIIAFALLLYMILDGFALGMGILFPLLDDHQKDIATSILLPTWDGNQTWLVFALACFYGMFPIAFAYIFPKI
YLSAILLVVMILLRGICFEFRLKSSQKGIKNWDKLFFISSFVATFLQGYIFGELIVGFPHNSFYNFGFSAVTGITLIFGY
SLLGATRLILKSERELFTKAKQLAKICCIILAVLMLVIGGMTPLYVKLPLDNLYKMAILIELFVLTIISFLVLIKVIEAK
NHALPYWLAVAIFILTYISMLTLIFPYIIPYQITYTQAQASDTTLIFTLIPAIIMIPLLLLYTSYAYYIFRGKTKEKLSY

Sequences:

>Translated_320_residues
MDLGLIWLAIIAFALLLYMILDGFALGMGILFPLLDDHQKDIATSILLPTWDGNQTWLVFALACFYGMFPIAFAYIFPKI
YLSAILLVVMILLRGICFEFRLKSSQKGIKNWDKLFFISSFVATFLQGYIFGELIVGFPHNSFYNFGFSAVTGITLIFGY
SLLGATRLILKSERELFTKAKQLAKICCIILAVLMLVIGGMTPLYVKLPLDNLYKMAILIELFVLTIISFLVLIKVIEAK
NHALPYWLAVAIFILTYISMLTLIFPYIIPYQITYTQAQASDTTLIFTLIPAIIMIPLLLLYTSYAYYIFRGKTKEKLSY
>Mature_320_residues
MDLGLIWLAIIAFALLLYMILDGFALGMGILFPLLDDHQKDIATSILLPTWDGNQTWLVFALACFYGMFPIAFAYIFPKI
YLSAILLVVMILLRGICFEFRLKSSQKGIKNWDKLFFISSFVATFLQGYIFGELIVGFPHNSFYNFGFSAVTGITLIFGY
SLLGATRLILKSERELFTKAKQLAKICCIILAVLMLVIGGMTPLYVKLPLDNLYKMAILIELFVLTIISFLVLIKVIEAK
NHALPYWLAVAIFILTYISMLTLIFPYIIPYQITYTQAQASDTTLIFTLIPAIIMIPLLLLYTSYAYYIFRGKTKEKLSY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=366, Percent_Identity=25.6830601092896, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787213, Length=366, Percent_Identity=26.5027322404372, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36344; Mature: 36344

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLGLIWLAIIAFALLLYMILDGFALGMGILFPLLDDHQKDIATSILLPTWDGNQTWLVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCCCHHHHH
ALACFYGMFPIAFAYIFPKIYLSAILLVVMILLRGICFEFRLKSSQKGIKNWDKLFFISS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHH
FVATFLQGYIFGELIVGFPHNSFYNFGFSAVTGITLIFGYSLLGATRLILKSERELFTKA
HHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLAKICCIILAVLMLVIGGMTPLYVKLPLDNLYKMAILIELFVLTIISFLVLIKVIEAK
HHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NHALPYWLAVAIFILTYISMLTLIFPYIIPYQITYTQAQASDTTLIFTLIPAIIMIPLLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
LYTSYAYYIFRGKTKEKLSY
HHHHHHHHHEECCCHHHCCC
>Mature Secondary Structure
MDLGLIWLAIIAFALLLYMILDGFALGMGILFPLLDDHQKDIATSILLPTWDGNQTWLVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCCCHHHHH
ALACFYGMFPIAFAYIFPKIYLSAILLVVMILLRGICFEFRLKSSQKGIKNWDKLFFISS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHH
FVATFLQGYIFGELIVGFPHNSFYNFGFSAVTGITLIFGYSLLGATRLILKSERELFTKA
HHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLAKICCIILAVLMLVIGGMTPLYVKLPLDNLYKMAILIELFVLTIISFLVLIKVIEAK
HHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NHALPYWLAVAIFILTYISMLTLIFPYIIPYQITYTQAQASDTTLIFTLIPAIIMIPLLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
LYTSYAYYIFRGKTKEKLSY
HHHHHHHHHEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]